EasyABC: Efficient Approximate Bayesian Computation Sampling Schemes
Version 1.5.99

Enables launching a series of simulations of a computer code from the R session, and to retrieve the simulation outputs in an appropriate format for post-processing treatments. Five sequential sampling schemes and three coupled-to-MCMC schemes are implemented.

AuthorFranck Jabot, Thierry Faure, Nicolas Dumoulin, Carlo Albert.
Date of publication2016-06-24 13:51:22
MaintainerNicolas Dumoulin <nicolas.dumoulin@irstea.fr>
LicenseGPL-3
Version1.5.99
URL http://easyabc.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EasyABC", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

ABC_emulation: Rejection sampling scheme for ABC using an emulator
ABC_mcmc: Coupled to MCMC schemes for ABC
ABC_rejection: Rejection sampling scheme for ABC
ABC_sequential: Sequential sampling schemes for ABC
binary_model_cluster: Wrapper for a binary executable for parallel simulations
EasyABC-internal: Internal EasyABC objects
EasyABC-package: EasyABC: performing efficient approximate Bayesian...
See all...

All man pages Function index File listing

Man pages

ABC_emulation: Rejection sampling scheme for ABC using an emulator
ABC_mcmc: Coupled to MCMC schemes for ABC
ABC_rejection: Rejection sampling scheme for ABC
ABC_sequential: Sequential sampling schemes for ABC
binary_model: Wrapper for a binary executable for non-parallel simulations
binary_model_cluster: Wrapper for a binary executable for parallel simulations
EasyABC-internal: Internal EasyABC objects
EasyABC-package: EasyABC: performing efficient approximate Bayesian...
SABC: Simulated Annealing approach to Approximate Bayesian...
trait_model: Trait model for EasyABC tutorial

Functions

ABC_Delmoral Source code
ABC_Delmoral_cluster Source code
ABC_Drovandi Source code
ABC_Drovandi_cluster Source code
ABC_Lenormand Source code
ABC_Lenormand_cluster Source code
ABC_MCMC Source code
ABC_MCMC2 Source code
ABC_MCMC2_cluster Source code
ABC_MCMC3 Source code
ABC_MCMC3_cluster Source code
ABC_PMC Source code
ABC_PMC_cluster Source code
ABC_emulation Man page Source code
ABC_launcher_not_uniform_cluster Source code
ABC_launcher_not_uniform_uni Source code
ABC_launcher_not_uniform_uni_cluster Source code
ABC_launcher_not_uniformc Source code
ABC_launcher_not_uniformc_cluster Source code
ABC_launcher_not_uniformc_uni_cluster Source code
ABC_mcmc Man page Source code
ABC_mcmc_cluster Source code
ABC_mcmc_internal Source code
ABC_rejection Man page Source code Source code
ABC_rejection_M Source code
ABC_rejection_M_cluster Source code
ABC_rejection_cluster Source code
ABC_rejection_internal Source code
ABC_rejection_internal_cluster Source code
ABC_rejection_lhs Source code
ABC_rejection_lhs_cluster Source code
ABC_sequential Man page Source code Source code
ABC_sequential_cluster Source code
ABC_sequential_emulation Source code
ABC_sequential_emulation_follow Source code
ABC_sequential_emulator Source code
EasyABC Man page
EasyABC-internal Man page
EasyABC-package Man page
SABC Man page Source code
SABC.inf Man page Source code
SABC.noninf Man page Source code
all_unif Source code
binary_model Man page Source code
binary_model_cluster Man page Source code
check_prior_test Source code
compute_ESS Source code
compute_below Source code
compute_dist Source code
compute_dist_M Source code
compute_weight Source code
compute_weight_delmoral Source code
compute_weight_prior Source code
compute_weight_prior_tab Source code
compute_weight_uni Source code
compute_weightb Source code
compute_weightb_uni Source code
create_dynamic_prior Source code
create_legacy_prior Source code
dist_compute_emulator Source code
emulator_locreg_deg2 Source code
make_proposal_range Source code
move_drovandi_diversify_cluster Source code
move_drovandi_end_cluster Source code
move_drovandi_ini_cluster Source code
move_particle Source code
move_particle_uni Source code
move_particle_uni_uniform Source code
move_particleb Source code
move_particleb_uni Source code
particle_pick Source code
particle_pick_delmoral Source code
predict_locreg_deg2 Source code
process_prior Source code
progressBar Source code
replicate_tab Source code
s_in_parameter_constraints Source code
s_included Source code
sample_prior Source code
selec_simul Source code
selec_simul_alpha Source code
selec_simulb Source code
trait_model Man page Source code
tricubic_weight Source code
updateProgressBar Source code
wrap_constants_in_model Source code

Files

CHANGELOG
DESCRIPTION
NAMESPACE
R
R/ABC_emulation.R
R/ABC_mcmc.R
R/ABC_rejection.R
R/ABC_sequential.R
R/EasyABC-internal.R
R/SABC-internal.R
R/SABC.R
R/binary_model.R
R/binary_model_cluster.R
R/trait_model.R
build
build/vignette.rds
inst
inst/doc
inst/doc/EasyABC.Rnw
inst/doc/EasyABC.pdf
man
man/ABC_emulation.Rd
man/ABC_mcmc.Rd
man/ABC_rejection.Rd
man/ABC_sequential.Rd
man/EasyABC-internal.Rd
man/EasyABC-package.Rd
man/SABC.Rd
man/binary_model.Rd
man/binary_model_cluster.Rd
man/trait_model.Rd
src
src/trait_model_rc.cpp
vignettes
vignettes/EasyABC.Rnw
vignettes/EasyABC.tex
vignettes/Makefile
EasyABC documentation built on May 21, 2017, 1:13 a.m.