ge03d2: GWA-type data on few small region

In GenABEL.data: Data Used by the GenABEL Examples and Test Functions

Description

ge03d2 A small data set (approximately 1,000 people and 8,000 SNPs) containing data on 3 autosomes and X chromsome. Is a good set for demonatration of the QC procedures (different genotyping errors are introduced) and GWA analysis. Run demo(ge03d2) to see a demo. This data set was developed for the "Advances in population- based studies" (Ge03) course of the Nihes.

ge03d2c A small data set (approximately 200 people and 8,000 SNPs) containing data on 3 autosomes and X chromsome. This data set is complementary to ge03d2.

ge03d2ex A small data set (approximately 150 people and 4,000 SNPs) containing data on 3 autosomes and X chromsome. Is a good set for demonatration of the QC procedures (different genotyping errors are introduced) and GWA analysis. This data set was developed for the "Advances in population- based studies" (Ge03) course of the Nihes. See vignette "GenABEL-tutorial.pdf" for details.

The data sets with extension ".clean" are sets after QC.

Usage

data(ge03d2)

Examples

#main example: use this to see full functionality
# demo(ge03d2)

# load and work with ge03d2
data(ge03d2)
#a <- qtscore(dm2,ge03d2)
#plot(a)

Example output

GenABEL.data documentation built on May 2, 2019, 5:48 p.m.