IBDlabels: Convert between different IBD-state labelling schemes

Convert "label", "lexicographic", "jacquard" and "vec", full state description vector. All conversions are done to and from "label", as used in IBD_Haplo. More information regarding IBD_Haplo can be found at www.stat.washington.edu/thompson/Genepi/pangaea.shtml

Author
Fiona Grimson
Date of publication
2014-12-21 00:38:12
Maintainer
Fiona Grimson <fgrimson@uw.edu>
License
GPL-3
Version
1.1

View on R-Forge

Man pages

allJaq
Jacquard ordering
allLex
Lexicographic ordering
allStates
Conversion Table for all labelling schemes
allVec
IBD state vectors
anRpackage-package
Convert between different IBD-state labelling schemes
maxlabel
Maximum Label for given number gametes

Files in this package

IBDlabels/DESCRIPTION
IBDlabels/NAMESPACE
IBDlabels/R
IBDlabels/R/allJaq.R
IBDlabels/R/allLex.R
IBDlabels/R/allStates.R
IBDlabels/R/allVec.R
IBDlabels/R/fgl2label.R
IBDlabels/R/jaq2label.R
IBDlabels/R/label2jaq.R
IBDlabels/R/label2lex.R
IBDlabels/R/label2vec.R
IBDlabels/R/lex2label.R
IBDlabels/R/maxlabel.R
IBDlabels/R/vec2label.R
IBDlabels/build
IBDlabels/build/vignette.rds
IBDlabels/inst
IBDlabels/inst/doc
IBDlabels/inst/doc/IBDlabels_tutorial.R
IBDlabels/inst/doc/IBDlabels_tutorial.Rnw
IBDlabels/inst/doc/IBDlabels_tutorial.pdf
IBDlabels/man
IBDlabels/man/allJaq.Rd
IBDlabels/man/allLex.Rd
IBDlabels/man/allStates.Rd
IBDlabels/man/allVec.Rd
IBDlabels/man/anRpackage-package.Rd
IBDlabels/man/maxlabel.Rd
IBDlabels/vignettes
IBDlabels/vignettes/IBDlabels_tutorial.Rnw
IBDlabels/vignettes/states
IBDlabels/vignettes/states/ibdstates.svg
IBDlabels/vignettes/states/s1.png
IBDlabels/vignettes/states/s10.png
IBDlabels/vignettes/states/s11.png
IBDlabels/vignettes/states/s12.png
IBDlabels/vignettes/states/s13.png
IBDlabels/vignettes/states/s14.png
IBDlabels/vignettes/states/s15.png
IBDlabels/vignettes/states/s2.png
IBDlabels/vignettes/states/s3.png
IBDlabels/vignettes/states/s4.png
IBDlabels/vignettes/states/s5.png
IBDlabels/vignettes/states/s6.png
IBDlabels/vignettes/states/s7.png
IBDlabels/vignettes/states/s8.png
IBDlabels/vignettes/states/s9.png