This is a package implemented for flexible identity-by-descent (IBD) matrix estimation in F2 pedigrees. The IBD matrix estimate is approached by a Monte Carlo strategy, where the segregation of founder alleles is easy to define. Epistatic IBD matrices can also be calculated for two arbitrary loci. Such IBD matrix estimates are typically used in variance component quantitative trait loci (QTL) analysis. Parallelization is implemented to enhance the performance of Monte Carlo sampling.
|Date of publication||None|
|Maintainer||Xia Shen <email@example.com>|
cnF2freq: Calculating Inheritance Probabilities using cnF2freq
MCIBD: Estimating Identity-By-Descent (IBD) Matrices using Monte...
MCIBD.chro: Estimating Identity-By-Descent (IBD) Matrices along A Whole...
MCIBD.epi2chro: Estimating Epistatic Identity-By-Descent (IBD) Matrices for...
MCIBD-package: Monte Carlo Identity-By-Descent Matrix Estimation
pedigree: A Pig Pedigree Information Dataset
probabilities: A Probailities Dataset of Pig Chromosome 6 from cnF2freq