MCIBD: Monte Carlo Identity-By-Descent Matrix Estimation

This is a package implemented for flexible identity-by-descent (IBD) matrix estimation in F2 pedigrees. The IBD matrix estimate is approached by a Monte Carlo strategy, where the segregation of founder alleles is easy to define. Epistatic IBD matrices can also be calculated for two arbitrary loci. Such IBD matrix estimates are typically used in variance component quantitative trait loci (QTL) analysis. Parallelization is implemented to enhance the performance of Monte Carlo sampling.

AuthorXia Shen
Date of publicationNone
MaintainerXia Shen <xia.shen@lcb.uu.se>
LicenseUnlimited
Version0.4

View on R-Forge

Files

MCIBD
MCIBD/NAMESPACE
MCIBD/data
MCIBD/data/datalist
MCIBD/data/pedigree.rda
MCIBD/data/probabilities.rda
MCIBD/R
MCIBD/R/MCIBD.R MCIBD/R/MCIBD.epi2chro.R MCIBD/R/cnF2freq.R MCIBD/R/MCIBD.chro.R
MCIBD/inst
MCIBD/inst/other.zip
MCIBD/inst/MCIBD-manual.pdf
MCIBD/inst/other.tar
MCIBD/inst/doc
MCIBD/inst/doc/Sweave.sty
MCIBD/inst/doc/MCIBD.pdf
MCIBD/inst/doc/MCIBD_note_100819.pdf
MCIBD/inst/doc/pdfpages.dtx
MCIBD/inst/doc/MCIBD.Rnw
MCIBD/inst/doc/pdfpages.ins
MCIBD/DESCRIPTION
MCIBD/man
MCIBD/man/MCIBD.Rd MCIBD/man/cnF2freq.Rd MCIBD/man/MCIBD.chro.Rd MCIBD/man/MCIBD-package.Rd MCIBD/man/pedigree.Rd MCIBD/man/MCIBD.epi2chro.Rd MCIBD/man/probabilities.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.