MLGL: Multi-Layer Goup-Lasso
Version 0.4

Group-lasso with hierarchical clustering.

AuthorQuentin Grimonprez
Date of publication2017-01-14 15:52:04
MaintainerQuentin Grimonprez <quentin.grimonprez@inria.fr>
LicenseGPL (>=2)
Version0.4
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MLGL", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

coef.cv.MLGL: Get coefficients from a 'cv.MLGL' object
Ftest: F-test
MLGL: Multi-Layer Group-Lasso
MLGL-package: MLGL
partialFtest: Partial F-test
selFWER: Selection from hierarchical testing with FWER control
stability.MLGL: Stability Selection for Multi-Layer Group-lasso
See all...

All man pages Function index File listing

Man pages

Chisqtest: Chi-square test
coef.cv.MLGL: Get coefficients from a 'cv.MLGL' object
coef.MLGL: Get coefficients from a 'MLGL' object
cv.MLGL: Multi-Layer Group-Lasso with cross V-fold validation
Ftest: F-test
fullProcess: Full process of MLGL
hierarchicalFDR: Hierachical testing with FDR control
hierarchicalFWER: Hierachical testing with FWER control
listToMatrix: Obtain a sparse matrix of the coefficients of the path
MLGL: Multi-Layer Group-Lasso
MLGL-package: MLGL
overlapgglasso: Group-lasso with overlapping groups
partialChisqtest: Chi-square F-test
partialFtest: Partial F-test
plot.cv.MLGL: Plot the cross-validation obtained from 'cv.MLGL' function
plot.MLGL: Plot the path obtained from 'MLGL' function
plot.stability.MLGL: Plot the stability path obtained from 'stability.MLGL'...
predict.cv.MLGL: Predict fitted values from a 'cv.MLGL' object
predict.MLGL: Predict fitted values from a 'MLGL' object
selFDR: Selection from hierarchical testing with FDR control
selFWER: Selection from hierarchical testing with FWER control
simuBlockGaussian: Simulate multivariate Gaussian samples with block diagonal...
stability.MLGL: Stability Selection for Multi-Layer Group-lasso
uniqueGroupHclust: Find all unique groups in 'hclust' results

Functions

Chisqtest Man page Source code
Ftest Man page Source code
MLGL Man page Source code
MLGL-package Man page
acpOLStest Source code
checkFullProcess Source code
checkOverlap Source code
checkParameters Source code
checkSimu Source code
checkhierarchicalFWER Source code
checkselFDR Source code
checkselFWER Source code
children Source code
coef.MLGL Man page Source code
coef.cv.MLGL Man page Source code
compHierMat Source code
compHierMatTot Source code
cv.MLGL Man page Source code
findIsolateVariable Source code
findRoot Source code
findRoot2 Source code
fullProcess Man page Source code
groupHier Source code
hierarchicalAdjustement Source code
hierarchicalFDR Man page Source code
hierarchicalFDRTesting Source code
hierarchicalFDRTestingClassical Source code
hierarchicalFWER Man page Source code
hierarchicalTesting Source code
hierarchicalTestingClassical Source code
lambda.interp Source code
lambdaseq Source code
leaves Source code
levelGroupHC Source code
levelMinWeight Source code
listToMatrix Man page Source code
numberLevels Source code
outerNode Source code
overlapgglasso Man page Source code
parent Source code
partialChisqtest Man page Source code
partialFtest Man page Source code
plot.MLGL Man page Source code
plot.cv.MLGL Man page Source code
plot.stability.MLGL Man page Source code
predict.MLGL Man page Source code
predict.cv.MLGL Man page Source code
preliminaryStep Source code
s.wholenumber Source code
selFDR Man page Source code
selFWER Man page Source code
shafferImprovement Source code
simuBlockGaussian Man page Source code
stability.MLGL Man page Source code
uniqueGroupHclust Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/MLGL-package.R
R/MLGL.R
R/cv.MLGL.R
R/fullProcess.R
R/hierarchicalFDR.R
R/hierarchicalFWER.R
R/hierarchicalTestClassical.R
R/overlap.R
R/predict.R
R/simuBlockGaussian.R
R/stability.R
R/testFunction.R
R/trash.R
R/treeFunction.R
R/uniqueGroupHclust.R
R/utilities.R
TODO
man
man/Chisqtest.Rd
man/Ftest.Rd
man/MLGL-package.Rd
man/MLGL.Rd
man/coef.MLGL.Rd
man/coef.cv.MLGL.Rd
man/cv.MLGL.Rd
man/fullProcess.Rd
man/hierarchicalFDR.Rd
man/hierarchicalFWER.Rd
man/listToMatrix.Rd
man/overlapgglasso.Rd
man/partialChisqtest.Rd
man/partialFtest.Rd
man/plot.MLGL.Rd
man/plot.cv.MLGL.Rd
man/plot.stability.MLGL.Rd
man/predict.MLGL.Rd
man/predict.cv.MLGL.Rd
man/selFDR.Rd
man/selFWER.Rd
man/simuBlockGaussian.Rd
man/stability.MLGL.Rd
man/uniqueGroupHclust.Rd
MLGL documentation built on May 21, 2017, 3:42 a.m.

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