MeDiChI: MeDiChI ChIP-chip deconvolution library

Model-based deconvolution of genome-wide binding (ChIP-chip) data

AuthorDavid J Reiss
Date of publicationNone
MaintainerDavid J Reiss <dreiss@systemsbiology.org>
LicenseGPL-2
Version0.4.0
http://baliga.systemsbiology.net/medichi

View on R-Forge

Functions

chip.deconv Man page
coef.chip.deconv Man page
coef.chip.deconv.entire.genome Man page
data.halo.hires Man page
data.halo.lowres Man page
data.yeast.gcn4 Man page
deconv.entire.genome Man page
fit.peak.profile Man page
gene.coords Man page
generate.binding.profile Man page
generate.fake.data Man page
kernel.halo.hires Man page
kernel.halo.lowres Man page
kernel.yeast.gcn4 Man page
kernel.yeast.gcn4.jbd Man page
MeDiChI Man page
MeDiChI-data Man page
MeDiChI-package Man page
plot.chip.deconv Man page
plot.chip.deconv.entire.genome Man page
plot.fit.peak.profile Man page
print.chip.deconv Man page
print.chip.deconv.entire.genome Man page

Files

MeDiChI
MeDiChI/data
MeDiChI/data/datalist
MeDiChI/data/halo.hires.rda
MeDiChI/data/halo.lowres.rda
MeDiChI/data/yeast.gcn4.rda
MeDiChI/R
MeDiChI/R/chip.deconv.pkg.R
MeDiChI/NAMESPACE
MeDiChI/inst
MeDiChI/inst/doc
MeDiChI/inst/doc/peakprofile.png
MeDiChI/inst/doc/MeDiChI.pdf
MeDiChI/inst/doc/MeDiChI.Rnw
MeDiChI/DESCRIPTION
MeDiChI/man
MeDiChI/man/generate.fake.data.Rd MeDiChI/man/chip.deconv.Rd MeDiChI/man/generate.binding.profile.Rd MeDiChI/man/MeDiChI-package.Rd MeDiChI/man/MeDiChI-data.Rd MeDiChI/man/fit.peak.profile.Rd MeDiChI/man/deconv.entire.genome.Rd
MeDiChI/demo
MeDiChI/demo/MeDiChI.R
MeDiChI/demo/00Index

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.