MeDiChI: MeDiChI ChIP-chip deconvolution library

Model-based deconvolution of genome-wide binding (ChIP-chip) data

Author
David J Reiss
Date of publication
None
Maintainer
David J Reiss <dreiss@systemsbiology.org>
License
GPL-2
Version
0.4.0
URLs

View on R-Forge

Man pages

chip.deconv
High-resolution model-based deconvolution of normalized...
deconv.entire.genome
High-resolution model-based deconvolution of normalized...
fit.peak.profile
Iteratively learn deconvolution kernel (peak profile) from...
generate.binding.profile
Construct the binding profile ('kernel') required as input...
generate.fake.data
Generate simulated ChIP-chip data.
MeDiChI-data
ChIP-chip data supporting the MeDiChI package
MeDiChI-package
MeDiChI ChIP-chip deconvolution library

Files in this package

MeDiChI
MeDiChI/data
MeDiChI/data/datalist
MeDiChI/data/halo.hires.rda
MeDiChI/data/halo.lowres.rda
MeDiChI/data/yeast.gcn4.rda
MeDiChI/R
MeDiChI/R/chip.deconv.pkg.R
MeDiChI/NAMESPACE
MeDiChI/inst
MeDiChI/inst/doc
MeDiChI/inst/doc/peakprofile.png
MeDiChI/inst/doc/MeDiChI.pdf
MeDiChI/inst/doc/MeDiChI.Rnw
MeDiChI/DESCRIPTION
MeDiChI/man
MeDiChI/man/generate.fake.data.Rd
MeDiChI/man/chip.deconv.Rd
MeDiChI/man/generate.binding.profile.Rd
MeDiChI/man/MeDiChI-package.Rd
MeDiChI/man/MeDiChI-data.Rd
MeDiChI/man/fit.peak.profile.Rd
MeDiChI/man/deconv.entire.genome.Rd
MeDiChI/demo
MeDiChI/demo/MeDiChI.R
MeDiChI/demo/00Index