m02-cytof: CyTOF Data
In Mender: Visualizing Topological Loops and Voids
cytof-data R Documentation
CyTOF Data
Description
This data set contains 18 columns of protein expression values
measured in 214 early monocyte cells using mass cytometry (CyTOF).
Usage
data(cytof)
Format
Note that there are three distinct objects included in the data
set: AML10.node287, AML10,node287.rips, and Arip.
AML10.node287A numerical data matrix with 214 rows
(single cells) amd 18 columns (antibody-protein markers). Values
were obtained using mass cytometry applied to a sample collected
from a patient with acute myeloid leukemia (AML).
AML10.node287.ripsThis object is a
"Rips diagram". It was produced by running the
ripsDiag function from the TDA R
package on the AML10.node287 data matrix.
AripThis object is a "Rips diagram". It was produced
by running the ripsDiag function from the
TDA R package on the Euclidean distance matrix
between the single cells.
Author(s)
Kevin R. Coombes krc@silicovore.com,
RB McGee mcgee@sholycross.edu,
Jake Reed hreed@augusta.edu
Source
Data were collected by Dr. Greg Behbehani while working in the
laboratory of Dr. Garry Nolan at Stanford University. This data set is
a tiny subset of the full data set, which was described previously in
the paper by Behbehani et al.
References
Behbehani GK, Samusik N, Bjornson ZB, Fantl WJ, Medeiros BC, Nolan
GP. Mass Cytometric Functional Profiling of Acute Myeloid Leukemia
Defines Cell-Cycle and Immunophenotypic Properties That Correlate with
Known Responses to Therapy. Cancer Discov. 2015
Sep;5(9):988-1003. doi: 10.1158/2159-8290.CD-15-0298.
Mender documentation built on Oct. 25, 2023, 3 a.m.
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| cytof-data | R Documentation |
CyTOF Data
Description
This data set contains 18 columns of protein expression values measured in 214 early monocyte cells using mass cytometry (CyTOF).
Usage
data(cytof)
Format
Note that there are three distinct objects included in the data
set: AML10.node287, AML10,node287.rips, and Arip.
AML10.node287A numerical data matrix with 214 rows (single cells) amd 18 columns (antibody-protein markers). Values were obtained using mass cytometry applied to a sample collected from a patient with acute myeloid leukemia (AML).
AML10.node287.ripsThis object is a "Rips diagram". It was produced by running the
ripsDiagfunction from theTDAR package on theAML10.node287data matrix.AripThis object is a "Rips diagram". It was produced by running the
ripsDiagfunction from theTDAR package on the Euclidean distance matrix between the single cells.
Author(s)
Kevin R. Coombes krc@silicovore.com, RB McGee mcgee@sholycross.edu, Jake Reed hreed@augusta.edu
Source
Data were collected by Dr. Greg Behbehani while working in the laboratory of Dr. Garry Nolan at Stanford University. This data set is a tiny subset of the full data set, which was described previously in the paper by Behbehani et al.
References
Behbehani GK, Samusik N, Bjornson ZB, Fantl WJ, Medeiros BC, Nolan GP. Mass Cytometric Functional Profiling of Acute Myeloid Leukemia Defines Cell-Cycle and Immunophenotypic Properties That Correlate with Known Responses to Therapy. Cancer Discov. 2015 Sep;5(9):988-1003. doi: 10.1158/2159-8290.CD-15-0298.
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