MixAll: Clustering using Mixture Models
Version 1.2.0

Algorithms and methods for estimating parametric mixture models for mixed data and with missing data.

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AuthorSerge Iovleff [aut, cre]
Date of publication2016-08-01 13:18:44
MaintainerSerge Iovleff <Serge.Iovleff@stkpp.org>
LicenseGPL (>= 2)
Version1.2.0
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MixAll", repos="http://R-Forge.R-project.org")

Man pages

birds: Qualitative data : morphological description of birds
bullsEye: Quantitative Data: bullsEye
car: Qualitative data : Car Evaluation
clusterAlgo: Create an instance of the ['ClusterAlgo'] class
ClusterAlgo-class: ['ClusterAlgo'] class for Cluster algorithms.
clusterCategorical: Create an instance of the ['ClusterCategorical'] class
ClusterCategorical-class: Definition of the ['ClusterCategorical'] class
ClusterCategoricalComponent-class: Definition of the ['ClusterCategoricalComponent'] class
clusterCategoricalNames: Create a vector of Categorical mixture model names.
clusterDiagGaussian: Create an instance of the ['ClusterDiagGaussian'] class
ClusterDiagGaussian-class: Definition of the ['ClusterDiagGaussian'] class
ClusterDiagGaussianComponent-class: Definition of the ['ClusterDiagGaussianComponent'] class
clusterDiagGaussianNames: Create a vector of diagonal Gaussian mixture model names.
clusterGamma: Create an instance of the ['ClusterGamma'] class
ClusterGamma-class: Definition of the ['ClusterGamma'] class
ClusterGammaComponent-class: Definition of the ['ClusterGammaComponent'] class
clusterGammaNames: Create a vector of gamma mixture model names.
clusterInit: Create an instance of ['ClusterInit'] class
ClusterInit-class: Constructor of the ['ClusterInit'] class
clusterKernel: Create an instance of the ['ClusterKernel'] class
ClusterKernel-class: Definition of the ['ClusterKernel'] class
ClusterKernelComponent-class: Definition of the ['ClusterKernelComponent'] class
clusterKernelNames: Create a vector of Kernel mixture model names.
clusterMixedData: Create an instance of the ['ClusterMixedData'] class
ClusterMixedData-class: Definition of the ['ClusterMixedData'] class
ClusterModels-class: Interface base Class ['IClusterModel'] for Cluster models.
clusterPoisson: Create an instance of the ['ClusterPoisson'] class
ClusterPoisson-class: Definition of the ['ClusterPoisson'] class
clusterPoissonNames: Create a vector of Poisson mixture model names.
clusterStrategy: Create an instance of ['ClusterStrategy'] class
ClusterStrategy-class: Constructor of ['ClusterStrategy'] class
DebTrivedi: Counting Data: DebTrivedi
extract-methods: Extract parts of a MixAll S4 class
geyser: Quantitative data: Old Faithful Geyser
HeartDisease: Mixed data : Cleveland Heart Disease Data
IClusterComponent-class: Definition of the ['IClusterComponent'] class
initialize-methods: Initialize an instance of a MixAll S4 class.
learnAlgo: Create an instance of the ['LearnAlgo'] class
LearnAlgo-class: ['LearnAlgo'] class for Cluster algorithms.
learners: Create an instance of a learn mixture model
learnMixedData: This function learn the optimal mixture model when the class...
missingValues-methods: Return the missing values of a component or a cluster class.
MixAll-package: MixAll allows to estimate parametric mixture models with...
plot-ClusterCategorical-method: Plotting of a class ['ClusterCategorical']
plot-ClusterDiagGaussian-method: Plotting of a class ['ClusterDiagGaussian']
plot-ClusterGamma-method: Plotting of a class ['ClusterGamma']
plot-ClusterKernel-method: Plotting of a class ['ClusterKernel']
plot-ClusterMixedData-method: Plotting of a class ['ClusterMixedData']
plot-ClusterPoisson-method: Plotting of a class ['ClusterPoisson']
print-methods: Print a MixAll S4 class to standard output.
show-methods: Show description of a MixAll S4 class to standard output.
summary-methods: Produce summary of a MixAll S4 class.
titanic: Qualitative data: Survival of passengers on the Titanic

Functions

ClusterAlgo Man page
ClusterAlgo-class Man page
ClusterCategorical-class Man page
ClusterCategoricalComponent Man page
ClusterCategoricalComponent-class Man page
ClusterDiagGaussian Man page
ClusterDiagGaussian-class Man page
ClusterDiagGaussianComponent Man page
ClusterDiagGaussianComponent-class Man page
ClusterGamma Man page
ClusterGamma-class Man page
ClusterGamma-method Man page
ClusterGammaComponent Man page
ClusterGammaComponent-class Man page
ClusterInit Man page
ClusterInit-class Man page
ClusterKernel Man page
ClusterKernel-class Man page
ClusterKernelComponent Man page
ClusterKernelComponent-class Man page
ClusterMixedData Man page
ClusterMixedData-class Man page
ClusterPoisson Man page
ClusterPoisson-class Man page
ClusterPoisson-method Man page
ClusterPoissonComponent Man page
ClusterPoissonComponent-class Man page
ClusterStrategy Man page
ClusterStrategy-class Man page
DebTrivedi Man page
Extract Man page
HeartDisease Man page
HeartDisease.cat Man page
HeartDisease.cont Man page
HeartDisease.target Man page
IClusterComponent Man page
IClusterComponent-class Man page
IClusterModel Man page
IClusterModel-class Man page
LearnAlgo Man page
LearnAlgo-class Man page
MixAll Man page
MixAll-package Man page
[ Man page
[,ClusterAlgo-method Man page
[,ClusterCategoricalComponent-method Man page
[,ClusterDiagGaussianComponent-method Man page
[,ClusterGammaComponent-method Man page
[,ClusterInit-method Man page
[,ClusterKernelComponent-method Man page
[,ClusterPoissonComponent-method Man page
[,ClusterStrategy-method Man page
[,LearnAlgo-method Man page
[<-,ClusterAlgo-method Man page
[<-,ClusterInit-method Man page
[<-,ClusterStrategy-method Man page
[<-,LearnAlgo-method Man page
birds Man page
bullsEye Man page
car Man page
checkDataInLearner Source code
checkPropInLearner Source code
clusterAlgo Man page Source code
clusterCategorical Man page Source code
clusterCategoricalNames Man page Source code
clusterDiagGaussian Man page Source code
clusterDiagGaussianNames Man page Source code
clusterFastStrategy Man page Source code
clusterGamma Man page Source code
clusterGammaNames Man page Source code
clusterInit Man page Source code
clusterKernel Man page Source code
clusterKernelNames Man page Source code
clusterMixedData Man page Source code
clusterPlot Source code
clusterPoisson Man page Source code
clusterPoissonNames Man page Source code
clusterPoissonPlot Source code
clusterSEMStrategy Man page Source code
clusterSemiSEMStrategy Man page Source code
clusterStrategy Man page Source code
clusterValidCategoricalNames Man page Source code
clusterValidDiagGaussianNames Man page Source code
clusterValidGammaNames Man page Source code
clusterValidKernelNames Man page Source code
clusterValidPoissonNames Man page Source code
createMixtureModel Source code
dGamma Source code
dGauss Source code
dPoisson Source code
geyser Man page
initialize,ClusterAlgo-method Man page
initialize,ClusterCategorical-method Man page
initialize,ClusterCategoricalComponent-method Man page
initialize,ClusterDiagGaussian-method Man page
initialize,ClusterDiagGaussianComponent-method Man page
initialize,ClusterGamma-method Man page
initialize,ClusterGammaComponent-method Man page
initialize,ClusterInit-method Man page
initialize,ClusterKernel-method Man page
initialize,ClusterKernelComponent-method Man page
initialize,ClusterMixedData-method Man page
initialize,ClusterPoisson-method Man page
initialize,ClusterPoissonComponent-method Man page
initialize,ClusterStrategy-method Man page
initialize,IClusterComponent-method Man page
initialize,IClusterModel-method Man page
initialize,LearnAlgo-method Man page
learnAlgo Man page Source code
learnCategorical Man page Source code
learnDiagGaussian Man page Source code
learnGamma Man page Source code
learnKernel Man page Source code
learnMixedData Man page Source code
learnPoisson Man page Source code
missingValues Man page
missingValues,ClusterCategorical-method Man page
missingValues,ClusterCategoricalComponent-method Man page
missingValues,ClusterDiagGaussian-method Man page
missingValues,ClusterDiagGaussianComponent-method Man page
missingValues,ClusterGamma-method Man page
missingValues,ClusterGammaComponent-method Man page
missingValues,ClusterKernel-method Man page
missingValues,ClusterKernelComponent-method Man page
missingValues,ClusterMixedData-method Man page
missingValues,ClusterPoisson-method Man page
missingValues,ClusterPoissonComponent-method Man page
plot,ClusterCategorical-method Man page
plot,ClusterDiagGaussian-method Man page
plot,ClusterGamma-method Man page
plot,ClusterKernel-method Man page
plot,ClusterMixedData-method Man page
plot,ClusterPoisson-method Man page
plot-ClusterCategorical Man page
plot-ClusterDiagGaussian Man page
plot-ClusterGamma, Man page
plot-ClusterKernel Man page
plot-ClusterMixedData Man page
plot-ClusterPoisson, Man page
print Man page
print,ClusterAlgo-method Man page
print,ClusterCategorical-method Man page
print,ClusterCategoricalComponent-method Man page
print,ClusterDiagGaussian-method Man page
print,ClusterDiagGaussianComponent-method Man page
print,ClusterGamma-method Man page
print,ClusterGammaComponent-method Man page
print,ClusterInit-method Man page
print,ClusterKernel-method Man page
print,ClusterKernelComponent-method Man page
print,ClusterMixedData-method Man page
print,ClusterPoisson-method Man page
print,ClusterPoissonComponent-method Man page
print,ClusterStrategy-method Man page
print,IClusterComponent-method Man page
print,IClusterModel-method Man page
print,LearnAlgo-method Man page
print-algo,ClusterAlgo-method Man page
print-algo,LearnAlgo-method Man page
print-init,ClusterInit,ClusterInit-method Man page
print-strategy,ClusterStrategy-method Man page
show Man page
show,ClusterAlgo-method Man page
show,ClusterCategorical-method Man page
show,ClusterCategoricalComponent-method Man page
show,ClusterDiagGaussian-method Man page
show,ClusterDiagGaussianComponent-method Man page
show,ClusterGamma-method Man page
show,ClusterGammaComponent-method Man page
show,ClusterInit-method Man page
show,ClusterKernel-method Man page
show,ClusterKernelComponent-method Man page
show,ClusterMixedData-method Man page
show,ClusterPoisson-method Man page
show,ClusterPoissonComponent-method Man page
show,ClusterStrategy-method Man page
show,IClusterComponent-method Man page
show,IClusterModel-method Man page
show,LearnAlgo-method Man page
show-ClusterCategorical,ClusterCategorical,ClusterCategorical-me Man page
show-ClusterCategoricalComponent,ClusterCategoricalComponent,Clu Man page
show-ClusterDiagGaussian,ClusterDiagGaussian,ClusterDiagGaussian Man page
show-ClusterDiagGaussianComponent,ClusterDiagGaussianComponent,C Man page
show-ClusterGamma,ClusterGamma,ClusterGamma-method Man page
show-ClusterGammaComponent,ClusterGammaComponent,ClusterGammaCom Man page
show-ClusterKernel,ClusterKernel,ClusterKernel-method Man page
show-ClusterKernelComponent,ClusterKernelComponent,ClusterKernel Man page
show-ClusterMixedData,ClusterMixedData,ClusterMixedData-method Man page
show-ClusterPoisson,ClusterPoisson,ClusterPoisson-method Man page
show-ClusterPoissonComponent,ClusterPoissonComponent,ClusterPois Man page
show-IClusterComponent,IClusterComponent,IClusterComponent-metho Man page
show-algo,ClusterAlgo-method Man page
show-algo,LearnAlgo-method Man page
show-init,ClusterInit,ClusterInit-method Man page
show-strategy,ClusterStrategy-method Man page
summary Man page
summary,ClusterCategorical-method Man page
summary,ClusterCategoricalComponent-method Man page
summary,ClusterDiagGaussian-method Man page
summary,ClusterGamma-method Man page
summary,ClusterKernel-method Man page
summary,ClusterMixedData-method Man page
summary,ClusterPoisson-method Man page
summary,IClusterComponent-method Man page
summary,IClusterModel-method Man page
summary-ClusterCategoricalComponent,ClusterCategoricalComponent, Man page
titanic Man page
visut Source code Source code

Files

DESCRIPTION
NAMESPACE
R
R/ClusterAlgo.R
R/ClusterCategorical.R
R/ClusterDiagGaussian.R
R/ClusterGamma.R
R/ClusterInit.R
R/ClusterKernel.R
R/ClusterMixedData.R
R/ClusterModelNames.R
R/ClusterPlot.R
R/ClusterPoisson.R
R/ClusterStrategy.R
R/IClusterModel.R
R/LearnAlgo.R
R/Learners.R
R/MixAll.R
R/global.R
R/missingValues.R
build
build/vignette.rds
cleanup
data
data/DebTrivedi.rda
data/HeartDisease.cat.rda
data/HeartDisease.cont.rda
data/HeartDisease.target.rda
data/birds.rda
data/bullsEye.rda
data/car.rda
data/geyser.rda
data/titanic.rda
inst
inst/NEWS.Rd
inst/bin
inst/bin/empty
inst/doc
inst/doc/Introduction-Mixtures.R
inst/doc/Introduction-Mixtures.Rnw
inst/doc/Introduction-Mixtures.pdf
inst/doc/Learning-Mixtures.R
inst/doc/Learning-Mixtures.Rnw
inst/doc/Learning-Mixtures.pdf
inst/include
inst/include/Clustering.h
inst/lib
inst/lib/empty
inst/makefile
inst/makevars
inst/projects
inst/projects/Clustering
inst/projects/Clustering/CMakeLists.txt
inst/projects/Clustering/include
inst/projects/Clustering/include/CategoricalMixtureModels
inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalBridge.h
inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalMixtureManager.h
inst/projects/Clustering/include/CategoricalMixtureModels/STK_MixtureCategoricalBase.h
inst/projects/Clustering/include/CategoricalMixtureModels/STK_MixtureCategorical_pjk.h
inst/projects/Clustering/include/CategoricalMixtureModels/STK_MixtureCategorical_pk.h
inst/projects/Clustering/include/DiagGaussianMixtureModels
inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_DiagGaussianBridge.h
inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_DiagGaussianMixtureManager.h
inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_MixtureDiagGaussianBase.h
inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_MixtureGaussian_s.h
inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_MixtureGaussian_sj.h
inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_MixtureGaussian_sjk.h
inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_MixtureGaussian_sk.h
inst/projects/Clustering/include/GammaMixtureModels
inst/projects/Clustering/include/GammaMixtureModels/STK_GammaBridge.h
inst/projects/Clustering/include/GammaMixtureModels/STK_GammaMixtureManager.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGammaBase.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_a_bjk.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_a_bk.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_aj_bjk.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_aj_bk.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ajk_b.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ajk_bj.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ajk_bjk.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ajk_bk.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ak_b.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ak_bj.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ak_bjk.h
inst/projects/Clustering/include/GammaMixtureModels/STK_MixtureGamma_ak_bk.h
inst/projects/Clustering/include/KernelMixtureModels
inst/projects/Clustering/include/KernelMixtureModels/STK_KernelGaussian.h
inst/projects/Clustering/include/KernelMixtureModels/STK_KernelGaussianBridge.h
inst/projects/Clustering/include/KernelMixtureModels/STK_KernelMixtureManager.h
inst/projects/Clustering/include/KernelMixtureModels/STK_MixtureKernelGaussian.h
inst/projects/Clustering/include/PoissonMixtureModels
inst/projects/Clustering/include/PoissonMixtureModels/STK_MixturePoissonBase.h
inst/projects/Clustering/include/PoissonMixtureModels/STK_MixturePoisson_ljk.h
inst/projects/Clustering/include/PoissonMixtureModels/STK_MixturePoisson_ljlk.h
inst/projects/Clustering/include/PoissonMixtureModels/STK_MixturePoisson_lk.h
inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonBridge.h
inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonMixtureManager.h
inst/projects/Clustering/include/STK_Clust_Util.h
inst/projects/Clustering/include/STK_IMixture.h
inst/projects/Clustering/include/STK_IMixtureBridge.h
inst/projects/Clustering/include/STK_IMixtureComposer.h
inst/projects/Clustering/include/STK_IMixtureDensity.h
inst/projects/Clustering/include/STK_IMixtureLearner.h
inst/projects/Clustering/include/STK_IMixtureManager.h
inst/projects/Clustering/include/STK_IMixtureModel.h
inst/projects/Clustering/include/STK_IMixtureModelBase.h
inst/projects/Clustering/include/STK_IMixturePredictor.h
inst/projects/Clustering/include/STK_IMixtureStatModel.h
inst/projects/Clustering/include/STK_MixtureAlgo.h
inst/projects/Clustering/include/STK_MixtureComposer.h
inst/projects/Clustering/include/STK_MixtureCriterion.h
inst/projects/Clustering/include/STK_MixtureFacade.h
inst/projects/Clustering/include/STK_MixtureInit.h
inst/projects/Clustering/include/STK_MixtureLearner.h
inst/projects/Clustering/include/STK_MixtureManager.h
inst/projects/Clustering/include/STK_MixtureParameters.h
inst/projects/Clustering/include/STK_MixtureSemiLearner.h
inst/projects/Clustering/include/STK_MixtureStrategy.h
inst/projects/Clustering/src
inst/projects/Clustering/src/STK_Clust_Util.cpp
inst/projects/Clustering/src/STK_IMixture.cpp
inst/projects/Clustering/src/STK_IMixtureComposer.cpp
inst/projects/Clustering/src/STK_IMixtureLearner.cpp
inst/projects/Clustering/src/STK_IMixtureModelBase.cpp
inst/projects/Clustering/src/STK_IMixtureStatModel.cpp
inst/projects/Clustering/src/STK_MixtureAlgo.cpp
inst/projects/Clustering/src/STK_MixtureComposer.cpp
inst/projects/Clustering/src/STK_MixtureCriterion.cpp
inst/projects/Clustering/src/STK_MixtureFacade.cpp
inst/projects/Clustering/src/STK_MixtureInit.cpp
inst/projects/Clustering/src/STK_MixtureLearner.cpp
inst/projects/Clustering/src/STK_MixtureSemiLearner.cpp
inst/projects/Clustering/src/STK_MixtureStrategy.cpp
inst/projects/Clustering/src/makefile
inst/projects/Clustering/src/makevars.local
inst/projects/MixAll
inst/projects/MixAll/ClusterFacade.h
inst/projects/MixAll/ClusterLauncher.h
inst/projects/MixAll/ILauncher.h
inst/projects/MixAll/LearnLauncher.h
inst/projects/MixAll/RDataHandler.h
man
man/ClusterAlgo-class.Rd
man/ClusterCategorical-class.Rd
man/ClusterCategoricalComponent-class.Rd
man/ClusterDiagGaussian-class.Rd
man/ClusterDiagGaussianComponent-class.Rd
man/ClusterGamma-class.Rd
man/ClusterGammaComponent-class.Rd
man/ClusterInit-class.Rd
man/ClusterKernel-class.Rd
man/ClusterKernelComponent-class.Rd
man/ClusterMixedData-class.Rd
man/ClusterModels-class.Rd
man/ClusterPoisson-class.Rd
man/ClusterStrategy-class.Rd
man/DebTrivedi.Rd
man/HeartDisease.Rd
man/IClusterComponent-class.Rd
man/LearnAlgo-class.Rd
man/MixAll-package.Rd
man/birds.Rd
man/bullsEye.Rd
man/car.Rd
man/clusterAlgo.Rd
man/clusterCategorical.Rd
man/clusterCategoricalNames.Rd
man/clusterDiagGaussian.Rd
man/clusterDiagGaussianNames.Rd
man/clusterGamma.Rd
man/clusterGammaNames.Rd
man/clusterInit.Rd
man/clusterKernel.Rd
man/clusterKernelNames.Rd
man/clusterMixedData.Rd
man/clusterPoisson.Rd
man/clusterPoissonNames.Rd
man/clusterStrategy.Rd
man/extract-methods.Rd
man/geyser.Rd
man/initialize-methods.Rd
man/learnAlgo.Rd
man/learnMixedData.Rd
man/learners.Rd
man/missingValues-methods.Rd
man/plot-ClusterCategorical-method.Rd
man/plot-ClusterDiagGaussian-method.Rd
man/plot-ClusterGamma-method.Rd
man/plot-ClusterKernel-method.Rd
man/plot-ClusterMixedData-method.Rd
man/plot-ClusterPoisson-method.Rd
man/print-methods.Rd
man/show-methods.Rd
man/summary-methods.Rd
man/titanic.Rd
src
src/ClusterFacade.cpp
src/ClusterLauncher.cpp
src/ILauncher.cpp
src/LearnLauncher.cpp
src/Makevars
src/RDataHandler.cpp
src/clusterMixAll.cpp
src/clusterMixAll.h
src/learnMixAll.cpp
src/learnMixAll.h
tests
tests/ClusterSimul.R
tests/clusterDiagGaussianLikelihood.R
tests/clusterGammaLikelihood.R
tests/simulHeterogeneous.R
tests/simulNonLinear.R
tests/testAllLearners.R
tests/testPoissonExample.R
vignettes
vignettes/Introduction-Mixtures.Rnw
vignettes/Learning-Mixtures.Rnw
vignettes/MixAll.bib
MixAll documentation built on May 21, 2017, 2:12 a.m.