MotilityLab: Quantitative Analysis of Motion

Statistics to quantify tracks of moving things (x-y-z-t data), such as cells, bacteria or animals. Available measures include mean square displacement, confinement ratio, autocorrelation, straightness, turning angle, and fractal dimension.

AuthorKatharina Dannenberg, Jeffrey Berry, Johannes Textor
Date of publication2015-11-19 15:11:13
MaintainerJohannes Textor <johannes.textor@gmx.de>
LicenseGPL-2
Version0.2-4
http://www.motilitylab.net

View on R-Forge

Man pages

aggregate.tracks: Compute Summary Statistics of Subtracks

applyStaggered: Compute a Measure on a Track in a Staggered Fashion

as.data.frame.tracks: Convert Tracks to Data Frame

as.list.tracks: Convert from Tracks to List

BCells: Two-Photon Data: B Cells in a Lymph Node

beaucheminTrack: Simulate a 3D Cell Track Using the Beauchemin Model

boundingBox: Bounding Box of a Tracks Object

brownianTrack: Simulate an Uncorrelated Random Walk

clusterTracks: Cluster Tracks

filterTracks: Filter Tracks

hotellingsTest: Test Unbiasedness of Motion

interpolateTrack: Interpolate Track Positions

maxTrackLength: Length of Longest Track

motilityLab-package: MotilityLab: Quantitative Motion Analysis

Neutrophils: Two-Photon Data: Neutrophils in an Infected Lung

normalizeToDuration: Normalize a Measure to Track Duration

normalizeTracks: Normalize Tracks

plot3d: Plot Tracks in 3D

plotTrackMeasures: Bivariate Scatterplot of Track Measures

plot.tracks: Plot Tracks in 2D

prefixes: Get Track Prefixes

projectDimensions: Extract Spatial Dimensions

read.tracks.csv: Read Tracks from Text File

repairGaps: Process Tracks Containing Gaps

selectTracks: Select Tracks by Measure Values

simulateTracks: Generate Tracks by Simulation

sort.tracks: Sort Track Positions by Time

splitTrack: Split Track into Multiple Tracks

staggered: Staggered Version of a Function

subsample: Subsample Track by Constant Factor

subtracks: Decompose Track(s) into Subtracks

TCells: Two-Photon Data: T Cells in a Lymph Node

timeStep: Compute Time Step of Tracks

TrackMeasures: Track Measures

tracks: Tracks Objects

wrapTrack: Create Track Object from Single Track

Files in this package

MotilityLab/DESCRIPTION
MotilityLab/NAMESPACE
MotilityLab/R
MotilityLab/R/functions.R MotilityLab/R/internal.R MotilityLab/R/simulate-tracks.R MotilityLab/R/track-measures.R MotilityLab/R/track-set-transformations.R
MotilityLab/data
MotilityLab/data/BCells.rda
MotilityLab/data/Neutrophils.rda
MotilityLab/data/TCells.rda
MotilityLab/man
MotilityLab/man/BCells.Rd MotilityLab/man/Neutrophils.Rd MotilityLab/man/TCells.Rd MotilityLab/man/TrackMeasures.Rd MotilityLab/man/aggregate.tracks.Rd MotilityLab/man/applyStaggered.Rd MotilityLab/man/as.data.frame.tracks.Rd MotilityLab/man/as.list.tracks.Rd MotilityLab/man/beaucheminTrack.Rd MotilityLab/man/boundingBox.Rd MotilityLab/man/brownianTrack.Rd MotilityLab/man/clusterTracks.Rd MotilityLab/man/filterTracks.Rd MotilityLab/man/hotellingsTest.Rd MotilityLab/man/interpolateTrack.Rd MotilityLab/man/maxTrackLength.Rd MotilityLab/man/motilityLab-package.Rd MotilityLab/man/normalizeToDuration.Rd MotilityLab/man/normalizeTracks.Rd MotilityLab/man/plot.tracks.Rd MotilityLab/man/plot3d.Rd MotilityLab/man/plotTrackMeasures.Rd MotilityLab/man/prefixes.Rd MotilityLab/man/projectDimensions.Rd MotilityLab/man/read.tracks.csv.Rd MotilityLab/man/repairGaps.Rd MotilityLab/man/selectTracks.Rd MotilityLab/man/simulateTracks.Rd MotilityLab/man/sort.tracks.Rd MotilityLab/man/splitTrack.Rd MotilityLab/man/staggered.Rd MotilityLab/man/subsample.Rd MotilityLab/man/subtracks.Rd MotilityLab/man/timeStep.Rd MotilityLab/man/tracks.Rd MotilityLab/man/wrapTrack.Rd
MotilityLab/tests
MotilityLab/tests/testthat
MotilityLab/tests/testthat.R
MotilityLab/tests/testthat/test1D.R
MotilityLab/tests/testthat/testBasics.R
MotilityLab/tests/testthat/testBorderCases.R
MotilityLab/tests/testthat/testNumerics.R
MotilityLab/tests/testthat/testSim.R

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.