ORCME: Order Restricted Clustering for Microarray Experiments

Provides clustering of genes with similar dose response (or time course) profiles. It implements the method described by Lin et al. (2012).

Author
Adetayo Kasim, Martin Otava, Tobias Verbeke
Date of publication
2015-07-23 12:31:52
Maintainer
Rudradev Sengupta <rudradev.sengupta@uhasselt.be>
License
GPL-3
Version
2.0.2

View on R-Forge

Man pages

doseData
Dose Data Example
geneData
Gene Expression Data Example
monotoneDirection
The monotone means under increasing/decreasing trend
ORCME
Order restricted clustering for dose-response trends in...
plotCluster
Plotting the gene specific profiles for one given cluster of...
plotIsomeans
Plot of the observed gene expression and the isotonic means...
plotLambda
Plot the variaty of the properties dependent on the...
resampleORCME
Estimation of the proportion of the heterogeneity in the...

Files in this package

ORCME/DESCRIPTION
ORCME/NAMESPACE
ORCME/NEWS
ORCME/R
ORCME/R/ORCME.R
ORCME/R/monotoneDirection.R
ORCME/R/plotCluster.R
ORCME/R/plotIsomeans.R
ORCME/R/plotLambda.R
ORCME/R/resampleORCME.R
ORCME/data
ORCME/data/doseData.rda
ORCME/data/geneData.rda
ORCME/man
ORCME/man/ORCME.Rd
ORCME/man/doseData.Rd
ORCME/man/geneData.Rd
ORCME/man/monotoneDirection.Rd
ORCME/man/plotCluster.Rd
ORCME/man/plotIsomeans.Rd
ORCME/man/plotLambda.Rd
ORCME/man/resampleORCME.Rd