Oncotree: Estimating oncogenetic trees
Version 0.3.3

Contains functions to construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis.

AuthorAniko Szabo, Lisa Pappas
Date of publication2013-12-10 21:28:47
MaintainerAniko Szabo <aszabo@mcw.edu>
LicenseGPL (>=2)
Version0.3.3
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Oncotree", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

ancestors: Find ancestors within an oncogenetic tree.
bootstrap.oncotree: Bootstrap an oncogenetic tree to assess stability
build.parent: Undocumented internal functions for the Oncotree package
distribution.oncotree: Find the event distribution defined by an oncogenetic tree
oncotree.fit: Build and display an oncogenetic tree
Oncotree-package: Constructing and evaluating oncogenetic trees
ov.cgh: Ovarian cancer CGH data
See all...

All man pages Function index File listing

Man pages

ancestors: Find ancestors within an oncogenetic tree.
bootstrap.oncotree: Bootstrap an oncogenetic tree to assess stability
build.parent: Undocumented internal functions for the Oncotree package
distribution.oncotree: Find the event distribution defined by an oncogenetic tree
error.rates_-: Set the error rates of an oncotree manually
generate.data: Generate random data from an oncogenetic tree
oncotree.fit: Build and display an oncogenetic tree
Oncotree-package: Constructing and evaluating oncogenetic trees
ov.cgh: Ovarian cancer CGH data

Functions

Oncotree Man page
Oncotree-package Man page
ancestors Man page
bootstrap.oncotree Man page
build.parent Man page
build.plot Man page
distribution.oncotree Man page
error.rates<- Man page
formatData Man page
generate.data Man page
least.common.ancestor Man page
marginal.distr Man page
oncotree.fit Man page
ov.cgh Man page
plot.boottree Man page
plot.oncotree Man page
print.boottree Man page
print.oncotree Man page
pstree.oncotree Man page

Files

DESCRIPTION
NAMESPACE
R
R/ancestors.R
R/bootstrap.oncotree.R
R/build.parent.R
R/build.plot.R
R/distribution.oncotree.R
R/error.rates_-.R
R/format.data.R
R/generate.data.R
R/joint.distr.R
R/least.common.ancestor.R
R/marginal.distr.R
R/oncotree.fit.R
R/plot.boottree.R
R/plot.oncotree.R
R/print.boottree.R
R/print.oncotree.R
R/pstree.oncotree.R
build
build/vignette.rds
data
data/ov.cgh.rda
inst
inst/doc
inst/doc/Oncotree.pdf
inst/doc/Oncotree_vignette.R
inst/doc/Oncotree_vignette.Rnw
inst/doc/Oncotree_vignette.pdf
man
man/Oncotree-package.Rd
man/ancestors.Rd
man/bootstrap.oncotree.Rd
man/build.parent.Rd
man/distribution.oncotree.Rd
man/error.rates_-.Rd
man/generate.data.Rd
man/oncotree.fit.Rd
man/ov.cgh.Rd
vignettes
vignettes/Oncotree_vignette.Rnw
vignettes/PlotForVignette.pdf
Oncotree documentation built on May 21, 2017, 1:09 a.m.

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