Man pages for OriGen
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces

10SNPs.mapPlink sample PED data
10SNPs.pedPlink sample PED data
CalcFractionsMultiLoglikCalculates the loglikelihood for placing a sample 100 percent...
ConvertMicrosatDataMicrosatellite file conversion for known and unknown data
ConvertPEDDataPlink PED file conversion
ConvertUnknownPEDDataPlink PED file conversion for known and unknown data
FindRhoParameterCrossValidationFinds the appropriate value of the Rho parameter via...
FitAdmixedModelFindUnknownsFit the OriGen model and place unknown individuals who may be...
FitMultinomialAdmixedModelFindUnknownsFit the multinomial OriGen model and place unknown...
FitMultinomialModelFit OriGen allele frequency surfaces
FitMultinomialModelFindUnknownsFit OriGen microsatellite allele frequency surfaces
FitOriGenModelFit OriGen allele frequency surfaces
FitOriGenModelFindUnknownsFit the OriGen model and place unknown individuals
GenerateHeatMapsFit OriGen microsatellite allele frequency surfaces
LocationsLocations of individuals in 10SNPs
LocationsTrialDataSmallLocations of individuals in MicrosatTrialDataSmall
MicrosatTrialDataSmallGenotypes of individuals in located at...
OriGen-packageFast Spatial Ancestry via Flexible Allele Frequency Surfaces
PlotAdmixedSurfacePlots admixture fraction results
PlotAlleleFrequencySurfacePlots an OriGen fitted allele frequency surface
PlotAlleleFrequencySurfaceOldPlots an OriGen fitted allele frequency surface
PlotUnknownHeatMapPlots a heat map depicting the probability an unknown...
RankSNPsLRTRank the SNPs based on the likelihood ratio test.
OriGen documentation built on May 2, 2019, 5:50 p.m.