ParallelStructure-package: R FRAMEWORK TO RUN PARALLEL JOBS IN STRUCTURE
In ParallelStructure: function to run parallel jobs in STRUCTURE
Description
Details
Author(s)
References
Description
Contains
- MPI_structure and parallel_structure: two R functions that calls STRUCTURE automatically for a set of predefined jobs. Jobs are distributed among all available computing units (cores or cpu) in order to make the best use of multi-core computer while running analysis of large data sets in STRUCTURE. For the user perspective MPI_structure and parallel_structure are equivalent and work with the same set of input. Performance might vary slightly as they rely on two different method for distributing the jobs among multiple processors.
MPI_structure relies on "Rmpi" package which is available from the CRAN package repository for MacOS but requires manual installation for Windows version of R.
parallel_structure: Relies on R parallel-package which is available for both Mac and Windows version of R since version 2.14. However the package is under development and have some limitation (should not be used in GUI or embedded environments).
Details
Package: ParallelStructure
Type: Package
Version: 1.0
Date: 2013-03-07
License: free
LazyLoad: yes
MPI_structure uses Rmpi package to pilot serial STRUCTURE jobs in parallel
MPI_structure requires:
1- the R package Rmpi : http://www.stats.uwo.ca/faculty/yu/Rmpi/
-MacOS: A functional version of Rmpi is available from the package repository CRAN
(otherwise see: http://www.stats.uwo.ca/faculty/yu/Rmpi/)
- Windows and LINUX manual installation is required for RMPI, see specific instruction on http://www.stats.uwo.ca/faculty/yu/Rmpi/
2- the software STRUCTURE installed: http://pritch.bsd.uchicago.edu/structure.html
Author(s)
Francois Besnier, Kevin Glover
francois.besnier@imr.no
References
Besnier F, Glover KA (2013) ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers. PLoS ONE 8(7): e70651. doi:10.1371/journal.pone.0070651
RMPI website: http://www.stats.uwo.ca/faculty/yu/Rmpi/
parallel-package
STRUCTURE website: http://pritch.bsd.uchicago.edu/software.html
ParallelStructure documentation built on May 2, 2019, 5:16 p.m.
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Description Details Author(s) References
Description
Contains
- MPI_structure and parallel_structure: two R functions that calls STRUCTURE automatically for a set of predefined jobs. Jobs are distributed among all available computing units (cores or cpu) in order to make the best use of multi-core computer while running analysis of large data sets in STRUCTURE. For the user perspective MPI_structure and parallel_structure are equivalent and work with the same set of input. Performance might vary slightly as they rely on two different method for distributing the jobs among multiple processors.
MPI_structure relies on "Rmpi" package which is available from the CRAN package repository for MacOS but requires manual installation for Windows version of R.
parallel_structure: Relies on R parallel-package which is available for both Mac and Windows version of R since version 2.14. However the package is under development and have some limitation (should not be used in GUI or embedded environments).
Details
| Package: | ParallelStructure |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2013-03-07 |
| License: | free |
| LazyLoad: | yes |
MPI_structure uses Rmpi package to pilot serial STRUCTURE jobs in parallel MPI_structure requires:
1- the R package Rmpi : http://www.stats.uwo.ca/faculty/yu/Rmpi/
-MacOS: A functional version of Rmpi is available from the package repository CRAN (otherwise see: http://www.stats.uwo.ca/faculty/yu/Rmpi/)
- Windows and LINUX manual installation is required for RMPI, see specific instruction on http://www.stats.uwo.ca/faculty/yu/Rmpi/
2- the software STRUCTURE installed: http://pritch.bsd.uchicago.edu/structure.html
Author(s)
Francois Besnier, Kevin Glover
francois.besnier@imr.no
References
Besnier F, Glover KA (2013) ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers. PLoS ONE 8(7): e70651. doi:10.1371/journal.pone.0070651
RMPI website: http://www.stats.uwo.ca/faculty/yu/Rmpi/
parallel-package
STRUCTURE website: http://pritch.bsd.uchicago.edu/software.html
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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