Description Usage Arguments Details Value Warning Author(s) See Also
Reads coefficients, standard errors, log-likelihoods, maximum gradients, correlation and variance-covariance matrices from AD Model Builder output files
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fn |
(character) Base name of AD Model Builder |
names |
(character) Names of variables |
drop_phase |
(logical) drop negative-phase (fixed) parameters from results? |
Given the output from an ADMB run on FOO.tpl, read_pars
reads the files
FOO.par (parameters, log-likelihood, max gradient); FOO.std (standard
deviations); and FOO.cor (correlations).
read_psv
reads the output of MCMC runs
coefficients |
parameter estimates |
coeflist |
parameter estimates in list format, with proper shape (vectors, matrices, etc.) |
se |
estimated standard errors of coefficients |
loglik |
log-likelihood |
maxgrad |
maximum gradient of log-likelihood surface |
cor |
correlation matrix |
vcov |
variance-covariance matrix |
npar |
number of parameters |
The coeflist
component is untested for data structures more
complicated than scalars, vectors or matrices (i.e. higher-dimensional
or ragged arrays)
Ben Bolker
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