RLadyBug: Analysis of Infectious Diseases using Stochastic Epidemic Models

Analysis of small scale infectious disease data using stochastic Susceptible-Exposed-Infectious-Recovered (SEIR) models. The R package wraps functionality of the Java program LadyBug, i.e. a Java virtual machine has to be installed on your computer.

AuthorMichael Hoehle and Ulrike Feldmann with contributions by Sebastian Meyer
Date of publication2014-05-18 20:55:08
MaintainerMichael Hoehle <hoehle@math.su.se>
Licensefile LICENSE
Version0.7-2
http://www.math.su.se./~hoehle/software/RLadyBug

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Files in this package

RLadyBug/DESCRIPTION
RLadyBug/LICENSE
RLadyBug/Makefile
RLadyBug/NAMESPACE
RLadyBug/NEWS
RLadyBug/R
RLadyBug/R/AllClass.R RLadyBug/R/AllGeneric.R RLadyBug/R/Experiment.R RLadyBug/R/Inference.R RLadyBug/R/InferenceMCMC.R RLadyBug/R/InferenceML.R RLadyBug/R/InferenceMLK.R RLadyBug/R/Layout.R RLadyBug/R/Options.R RLadyBug/R/OptionsMCMC.R RLadyBug/R/OptionsML.R RLadyBug/R/RLadyBugOptions.R RLadyBug/R/functions.R RLadyBug/R/zzz.R
RLadyBug/data
RLadyBug/data/abakaliki.RData
RLadyBug/data/csfv.RData
RLadyBug/data/csfvML.RData
RLadyBug/data/csfvTDprior.RData
RLadyBug/data/hksars.RData
RLadyBug/data/laevens.RData
RLadyBug/data/laevensML.RData
RLadyBug/data/oneill.RData
RLadyBug/demo
RLadyBug/demo/00Index
RLadyBug/demo/article-csda.R
RLadyBug/demo/simulate.R
RLadyBug/inst
RLadyBug/inst/CITATION
RLadyBug/inst/LadyBug
RLadyBug/inst/LadyBug/LICENSE.txt
RLadyBug/inst/LadyBug/README.txt
RLadyBug/inst/LadyBug/bin
RLadyBug/inst/LadyBug/bin/LICENSE.txt
RLadyBug/inst/LadyBug/bin/hydra.jar
RLadyBug/inst/LadyBug/bin/ladybug.jar
RLadyBug/inst/LadyBug/bin/ladybug.sh
RLadyBug/inst/LadyBug/bin/simsellke.sh
RLadyBug/inst/LadyBug/examples
RLadyBug/inst/LadyBug/examples/README.txt
RLadyBug/inst/LadyBug/examples/abakaliki
RLadyBug/inst/LadyBug/examples/abakaliki/README.txt
RLadyBug/inst/LadyBug/examples/abakaliki/abakaliki.data
RLadyBug/inst/LadyBug/examples/abakaliki/mcmc.sir
RLadyBug/inst/LadyBug/examples/csfv
RLadyBug/inst/LadyBug/examples/csfv/README.txt
RLadyBug/inst/LadyBug/examples/csfv/csfv-TDprior.data
RLadyBug/inst/LadyBug/examples/csfv/csfv-ml.data
RLadyBug/inst/LadyBug/examples/csfv/csfv.data
RLadyBug/inst/LadyBug/examples/csfv/csfv.txt
RLadyBug/inst/LadyBug/examples/csfv/mcmc.sir
RLadyBug/inst/LadyBug/examples/csfv/ml.sir
RLadyBug/inst/LadyBug/examples/laevens
RLadyBug/inst/LadyBug/examples/laevens/laevens-ml.data
RLadyBug/inst/LadyBug/examples/laevens/laevens.data
RLadyBug/inst/LadyBug/examples/laevens/mcmc.sir
RLadyBug/inst/LadyBug/examples/laevens/ml.sir
RLadyBug/inst/LadyBug/examples/oneill
RLadyBug/inst/LadyBug/examples/oneill/mcmc.sir
RLadyBug/inst/LadyBug/examples/oneill/oneill.data
RLadyBug/inst/LadyBug/examples/sim
RLadyBug/inst/LadyBug/examples/sim/4x2.data
RLadyBug/inst/LadyBug/examples/sim/8x16.data
RLadyBug/inst/LadyBug/examples/sim/8x8.data
RLadyBug/inst/LadyBug/examples/sim/README.txt
RLadyBug/inst/LadyBug/examples/sim/mcmc.sir
RLadyBug/inst/LadyBug/examples/sim/ml.sir
RLadyBug/inst/LadyBug/examples/sim/show.R
RLadyBug/inst/LadyBug/examples/sim/sim8x16-1.pdf
RLadyBug/inst/LadyBug/examples/sim/sim8x16-2.pdf
RLadyBug/inst/LadyBug/examples/sim/sim8x16-3.pdf
RLadyBug/inst/LadyBug/examples/sim/sim8x16-4.pdf
RLadyBug/inst/LadyBug/examples/sim/sim8x16-5.pdf
RLadyBug/inst/LadyBug/examples/sim/sim8x16-6.pdf
RLadyBug/inst/LadyBug/examples/sim/sim8x16-7.pdf
RLadyBug/inst/LadyBug/examples/sim/sim8x16-8.pdf
RLadyBug/man
RLadyBug/man/LBExperiment-class.Rd RLadyBug/man/LBInference-class.Rd RLadyBug/man/LBInferenceMCMC-class.Rd RLadyBug/man/LBInferenceML-class.Rd RLadyBug/man/LBInferenceMLK-class.Rd RLadyBug/man/LBLayout-class.Rd RLadyBug/man/LBOptions-class.Rd RLadyBug/man/LBOptionsMCMC-class.Rd RLadyBug/man/LBOptionsML-class.Rd RLadyBug/man/RLadyBug-package.Rd RLadyBug/man/RLadyBug.options.Rd RLadyBug/man/abakaliki.Rd RLadyBug/man/csfv.Rd RLadyBug/man/hksars.Rd RLadyBug/man/ladybugExample.Rd RLadyBug/man/laevens.Rd RLadyBug/man/oneill.Rd RLadyBug/man/readSpecFile.Rd RLadyBug/man/seir.Rd
RLadyBug/test
RLadyBug/test/LadyBug.R
RLadyBug/test/runit.ladybug.r
RLadyBug/test/runit.plot.r
RLadyBug/test/test_r_unit.r

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