API for SVAlignR
Recovering Structure of Long Molecules from Structural Variation Data
| Global functions | |
|---|---|
| .createGraph | Source code |
| .makeDecompLayout | Source code |
| .makeEdgeListFromMotifs | Source code |
| .makeEdgesFromDecomposition | Source code |
| .makeLayoutFromMotifs | Source code |
| .makeNodeListFromMotifs | Source code |
| .makeNodesFromDecomp | Source code |
| .xlate | Source code |
| AlignedCluster-class | Man page |
| Breakpoints | Man page Source code |
| Breakpoints-class | Man page |
| Cipher | Man page Source code |
| Cipher-class | Man page |
| DeBruijn-class | Man page |
| DecompositionGraph | Man page Source code |
| MotifGraph | Man page Source code |
| SVAlignR-data | Man page |
| SequenceCluster | Man page Source code |
| SequenceCluster-class | Man page |
| StringGraph | Man page |
| StringGraph-class | Man page |
| align | Source code |
| alignAllClusters | Man page Source code |
| alignCluster | Man page Source code |
| breakpoints | Man page |
| countWords | Man page Source code |
| deBruijn | Man page Source code |
| decode | Man page Source code |
| dekomp | Source code |
| encode | Man page Source code |
| exportSG | Man page Source code |
| heat | Man page Source code |
| image,AlignedCluster-method | Man page |
| longreads | Man page |
| makeEdges | Source code |
| makeSubsMatrix | Man page Source code |
| makeWords | Man page Source code |
| plot,Breakpoints,missing-method | Man page |
| plot,SequenceCluster,missing-method | Man page |
| plot,StringGraph,ANY-method | Man page |
| plotWords | Man page Source code |
| updateClusters | Man page Source code |
