08-debruijn: Class '"DeBruijn"'

In SVAlignR: Recovering Structure of Long Molecules from Structural Variation Data

Class "DeBruijn"

Description

Classes for contructing de Bruijn graphs from collections of long read sequences mappe over brakpoints.

Usage

deBruijn(rawseq, M)

Arguments

rawseq	A character vecvtor of the long read sequences, expressed as hyphen-separated breakpoint ids.
M	An integer; the length of the motifs/words to be used in constructing the graph.

Value

The deBruijn constructor returns a newly created object of the DeBruijn class.

Objects from the Class

Objects should be defined using the deBruijn constructor.

Slots

G:

An object of hhe igraph class

adjmat:

An adjacency matrix.

motifs:

A table of motifs/words.

Author(s)

Kevin R. Coombes <[e-mail]>

SVAlignR documentation built on Sept. 20, 2025, 3:01 p.m.