DeBruijn-class | R Documentation |
"DeBruijn"
Classes for contructing de Bruijn graphs from collections of long read sequences mappe over brakpoints.
deBruijn(rawseq, M)
rawseq |
A character vecvtor of the long read sequences, expressed as hyphen-separated breakpoint ids. |
M |
An integer; the length of the motifs/words to be used in constructing the graph. |
The deBruijn
constructor returns a newly created object of the
DeBruijn
class.
Objects should be defined using the deBruijn
constructor.
G
:An object of hhe igraph
class
adjmat
:An adjacency matrix.
motifs
:A table of motifs/words.
Kevin R. Coombes <krc@silicovore.com>
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