08-debruijn: Class '"DeBruijn"'

DeBruijn-classR Documentation

Class "DeBruijn"

Description

Classes for contructing de Bruijn graphs from collections of long read sequences mappe over brakpoints.

Usage

deBruijn(rawseq, M)

Arguments

rawseq

A character vecvtor of the long read sequences, expressed as hyphen-separated breakpoint ids.

M

An integer; the length of the motifs/words to be used in constructing the graph.

Value

The deBruijn constructor returns a newly created object of the DeBruijn class.

Objects from the Class

Objects should be defined using the deBruijn constructor.

Slots

G:

An object of hhe igraph class

adjmat:

An adjacency matrix.

motifs:

A table of motifs/words.

Author(s)

Kevin R. Coombes <krc@silicovore.com>


SVAlignR documentation built on Sept. 20, 2025, 3:01 p.m.