SegAnnot: Annotation-aware segmentation via dynamic programing

The SegAnnot package provides a function 'SegAnnot()' that calculates the L2 optimal segmentation for a given set of 1-annotated regions.

AuthorGuillem Rigaill, Toby Dylan Hocking
Date of publication2013-03-19 10:51:51
MaintainerGuillem Rigaill <g.rigaill@nki.nl>
LicenseUnlimited
Version1.2

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Files

man
man/SegAnnotBasesC.Rd man/geom_tallrect.Rd man/smoothedSignal.Rd man/profiles.Rd man/signal.colors.Rd man/run.cghseg.Rd man/SegAnnot.Rd man/zstar.Rd man/breakpoint.colors.Rd man/SegAnnotBases.Rd
DESCRIPTION
src
src/FindOptimalSegmentations.h
src/bridge.c
src/FindOptimalSegmentations.c
data
data/datalist
data/profiles.RData
NAMESPACE
inst
inst/doc
inst/doc/SegAnnot.pdf
inst/doc/SegAnnot.Rnw
R
R/findOptimalSegmentations.R R/plot.R R/cghseg.R
NEWS
vignettes
vignettes/refs.bib
vignettes/SegAnnot.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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