SegAnnot: Annotation-aware segmentation via dynamic programing

The SegAnnot package provides a function 'SegAnnot()' that calculates the L2 optimal segmentation for a given set of 1-annotated regions.

AuthorGuillem Rigaill, Toby Dylan Hocking
Date of publication2013-03-19 10:51:51
MaintainerGuillem Rigaill <g.rigaill@nki.nl>
LicenseUnlimited
Version1.2

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Files in this package

SegAnnot
SegAnnot/man
SegAnnot/man/SegAnnotBasesC.Rd SegAnnot/man/geom_tallrect.Rd SegAnnot/man/smoothedSignal.Rd SegAnnot/man/profiles.Rd SegAnnot/man/signal.colors.Rd SegAnnot/man/run.cghseg.Rd SegAnnot/man/SegAnnot.Rd SegAnnot/man/zstar.Rd SegAnnot/man/breakpoint.colors.Rd SegAnnot/man/SegAnnotBases.Rd
SegAnnot/DESCRIPTION
SegAnnot/src
SegAnnot/src/FindOptimalSegmentations.h
SegAnnot/src/bridge.c
SegAnnot/src/FindOptimalSegmentations.c
SegAnnot/data
SegAnnot/data/datalist
SegAnnot/data/profiles.RData
SegAnnot/NAMESPACE
SegAnnot/inst
SegAnnot/inst/doc
SegAnnot/inst/doc/SegAnnot.pdf
SegAnnot/inst/doc/SegAnnot.Rnw
SegAnnot/R
SegAnnot/R/findOptimalSegmentations.R SegAnnot/R/plot.R SegAnnot/R/cghseg.R
SegAnnot/NEWS
SegAnnot/vignettes
SegAnnot/vignettes/refs.bib
SegAnnot/vignettes/SegAnnot.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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