simulateIDM: Sample illness-death model data

Description Usage Arguments Details See Also Examples

View source: R/simulateIDM.R

Description

Simulate data from an illness-death model with interval censored event times and covariates

Usage

1
simulateIDM(n = 100)

Arguments

n

number of observations

Details

Simulate data from an illness-death model with interval censored event times and covariates for the purpose of illustrating the help pages of the SmoothHazard package. See the body of the function for details, i.e., evaluate simulateIDM

See Also

idmModel sim.idmModel

Examples

1
2

Example output

Loading required package: prodlim
function (n = 100) 
{
    m <- idmModel(shape.waittime = 2, scale.lifetime = 1/2000, 
        scale.waittime = 1/3000, scale.illtime = 1/7000, scale.censtime = 1/1000, 
        n.inspections = 5, schedule = 10, punctuality = 5)
    lava::distribution(m, "X1") <- lava::binomial.lvm(p = 0.3)
    lava::distribution(m, "X2") <- lava::normal.lvm(mean = 120, 
        sd = 20)
    lava::distribution(m, "X3") <- lava::normal.lvm(mean = 50, 
        sd = 20)
    lava::regression(m, to = "latent.illtime", from = "X1") <- 0.7
    lava::regression(m, to = "latent.illtime", from = "X2") <- 0.07
    lava::regression(m, to = "latent.illtime", from = "X3") <- -0.1
    lava::regression(m, to = "latent.waittime", from = "X1") <- 0.8
    lava::regression(m, to = "latent.lifetime", from = "X1") <- 0.7
    lava::sim(m, n)
}
<environment: namespace:SmoothHazard>
      censtime X1        X2           X3       illtime illstatus    lifetime
1   1493.96952  0 109.77755  60.63871803   -9.00000000         0 3268.664940
2   1639.77718  0 117.29686  45.28633089  101.90947173         1  118.762622
3    469.45273  0 114.67892  56.76848488  190.10216648         1  212.019245
4    286.67124  0 123.90480  42.62273214    4.65995317         1   92.806191
5    258.98340  1 117.37217  67.10183614  131.19503453         1  167.378905
6   1482.64542  0 114.19940  82.43241735   -9.00000000         0 2475.695409
7    612.84198  0 130.89000  54.87007303  122.04493645         1  180.276067
8    409.19945  1 121.89506  52.63373433  267.73358420         1  290.710763
9    886.04569  1 110.26603  33.61339500   11.03813662         1   46.451478
10   809.28219  1 131.90071  59.09547248  137.40899130         1  188.894604
11  1348.35392  0 137.54954  23.02510173    0.86146020         1   41.576791
12  3786.29046  1 139.90559  32.73149650    2.67630476         1   38.477688
13   540.51665  0 101.01885  29.29664303   -9.00000000         0   69.131347
14    20.45833  0 131.08248  72.49159783  277.83833736         1  279.189509
15   661.26951  1 111.69115  30.86817240   61.84556806         1   87.398326
16   867.67659  0 133.42959  22.77327272   15.65859865         1   23.589790
17   122.52997  1 122.41774  61.07513263  638.92775583         1  663.540469
18   964.27382  0 140.28408  33.42970285    4.06946551         1   69.189141
19   101.30829  1 125.70528  32.89047563    3.38316431         1   25.692165
20   124.63620  0 116.81232  51.32649246  446.27752621         1  514.693704
21   715.86443  0 113.74552  33.91929467  102.02700256         1  139.627156
22  1055.65418  0 113.16236  47.53078281   -9.00000000         0   68.702261
23   634.79653  0 108.35057  29.77308271  109.27172666         1  169.501362
24   532.69183  0 116.83635  25.64877544    7.89191586         1   43.826857
25  4410.91377  1 101.29673  40.10651615  119.83714392         1  171.637078
26  1256.48648  0 106.98680  59.88130504 2613.00939965         1 2666.106858
27  1008.99348  1 116.39476  57.51195213  210.77808132         1  255.087283
28   201.13788  1 114.81665  36.45232532   18.14352533         1   70.753164
29  2515.38150  0 134.51071  25.83843013   13.57466478         1   47.324274
30  2323.69089  1 131.89288  47.75134043    1.62731904         1   37.448463
31   789.45525  1 112.74614  41.20497238  361.84345337         1  393.936462
32   198.60503  0  94.06169  52.84328019   -9.00000000         0 1135.168873
33  2035.90419  0 109.15161  56.60422498   -9.00000000         0  740.282761
34  1312.60059  0 123.05399  -9.03194992    0.05336584         1   41.864547
35  1872.43813  0 118.54371  57.89637831   -9.00000000         0  784.644493
36  1572.65057  0  83.92197  20.88742310  226.41854836         1  236.812356
37  1777.21031  0 134.35646  48.18731560   60.49822901         1  118.320580
38    88.56705  0  97.31681  58.32162734   -9.00000000         0  929.543630
39   612.72060  0 138.87441  43.10329736   -9.00000000         0   23.483773
40   312.76169  0 119.19572  30.89928035   67.49257339         1  126.431820
41  2849.77796  1 109.24663  37.23886756   20.59079434         1   62.602043
42   353.87079  0 127.53778  42.30282926   32.36887671         1   93.333288
43  1727.74736  0  97.71949  56.66066417   -9.00000000         0   74.284039
44   640.12234  0  86.43871  40.93405712  686.24558902         1  724.884760
45   506.52687  1 124.53812  55.32535478   -9.00000000         0  441.267846
46  1214.42861  1 119.58726  60.16639899   -9.00000000         0    4.559497
47    15.10516  1  97.24547  48.82492506  788.17383751         1  802.023159
48  1175.14906  1 131.17300 104.48967470   -9.00000000         0   98.334550
49  2014.50204  1 125.58443  62.60086499   -9.00000000         0   28.945032
50  1184.52858  1 141.21725  43.80741632   26.50848230         1   54.344555
51  3116.29411  1 100.54627  92.91461562   -9.00000000         0  592.842273
52   351.45252  0 125.78927  51.84507949  619.31417677         1  676.898185
53    23.77430  0 108.34185  49.35792506   21.38756092         1   91.229982
54   218.12787  0 135.96467  64.80261652  307.57878354         1  357.043965
55  1501.56134  1 114.43539  45.52256176   26.98488634         1   46.152735
56  1972.80022  0 118.44394  40.78412393   -9.00000000         0   86.119244
57   732.70134  1 146.89477  56.84240078    9.12154687         1   24.562312
58  1830.40249  0 146.54982  52.32448199   24.47258117         1   83.537209
59   262.36169  1 117.58018  56.28542897   -9.00000000         0  985.586511
60   547.37603  1 121.10303  56.61459119   57.60509430         1   82.387699
61   479.84239  0 126.93031  45.72940760   36.11730554         1   75.838343
62   122.91338  0 117.41383  39.64743545   39.30049404         1   51.264510
63  1145.47276  0 145.60160  47.32353158   18.23075466         1  109.617124
64  2137.19256  0  78.32416  34.81658680   -9.00000000         0  578.606680
65   832.95432  1 119.41137  50.90570180   90.47270074         1   98.573696
66    22.94987  1 112.46628  20.84197509   18.52683842         1   28.260944
67   268.90162  1 146.25882  38.91646749    6.23839323         1   38.717755
68  1549.05393  0 113.47901  19.61862282   15.34737774         1   34.598347
69   553.98617  1  57.06778  43.97662082   -9.00000000         0   36.844833
70   146.88870  0  95.39919  42.03864599  683.04477589         1  690.285038
71   111.93741  0 110.24193  44.90554313  124.78270470         1  196.182956
72   128.55679  1 131.55753  54.43565355   15.84479750         1   49.385178
73  1096.77701  0 131.99397  75.40418685   -9.00000000         0   41.892671
74   970.43160  0 145.17983  81.97237559   -9.00000000         0  441.839517
75  5148.19875  1 118.25445  38.58619071    7.39312051         1   50.613192
76   609.48494  1 153.80265  60.30847415    9.47284215         1   36.897521
77   199.91967  0 107.14291  46.14505282  149.04040282         1  199.097022
78  2615.18363  1 105.03305  24.81481075   47.58812134         1   78.362028
79  1483.25017  0 145.63266  70.02651906   14.26487606         1   78.992840
80   310.62845  0  95.06120  39.69217118  276.72265891         1  312.990632
81   153.62156  1 136.84952  88.69507880  179.34890892         1  205.753165
82  4098.68065  0 107.84447  52.96750076  151.33708044         1  184.377737
83    88.71403  0 118.01893  13.22509407    5.24991635         1   37.637840
84   525.98220  1 117.72427  38.98775357   18.35248584         1   22.007453
85  3334.04653  0 131.27462  58.71516672  567.56372114         1  581.888977
86  1196.79535  0  94.94021  47.06907805  972.99050780         1 1025.332299
87   535.94450  0 106.07183  63.66829305  190.04848340         1  220.669503
88   157.82753  0 110.50796  38.62576768   -9.00000000         0  151.821370
89   173.54997  0 141.83353  78.35780810    5.38295320         1   79.412657
90   587.00821  0 107.78982  63.89825096   -9.00000000         0 2055.244270
91   368.12949  1 113.12716  79.61303936   -9.00000000         0  213.806958
92   299.74346  0 130.74208  72.46178703   11.62281739         1  101.706729
93   603.87826  0 115.96173  25.25744676   36.67511014         1  115.065046
94   866.69528  0 129.35159  30.66769055   17.10487674         1   69.717843
95  2171.64609  0 117.16539  16.76784688   22.52359451         1   70.273354
96   114.68028  0 115.65293  39.28802544   75.57113604         1  108.977607
97   984.60842  1  93.76191  32.92419413  355.11687678         1  380.901968
98   781.90170  0 129.10804  74.42653068 1076.76213582         1 1097.858334
99   328.24586  1 102.99470  18.66412757   27.26871389         1   51.088128
100 1428.29725  0  74.57253  -0.09778986   92.14365932         1  126.244265
             L           R seen.ill seen.exit observed.lifetime
1    52.815982 1493.969522        0         0       1493.969522
2    29.837143  118.762622        1         1        118.762622
3    54.967536  212.019245        1         1        212.019245
4     0.000000    8.485568        1         1         92.806191
5    55.033640  167.378905        1         1        167.378905
6    58.157176 1482.645422        0         0       1482.645422
7    70.978556  180.276067        1         1        180.276067
8    32.091585  290.710763        1         1        290.710763
9     8.747425   12.102303        1         1         46.451478
10   52.119043  188.894604        1         1        188.894604
11    0.000000    3.525666        1         1         41.576791
12    0.000000   12.829151        1         1         38.477688
13   69.131347   69.131347        0         1         69.131347
14   14.584659   20.458330        0         0         20.458330
15   43.625730   87.398326        1         1         87.398326
16   11.999272   16.923446        1         1         23.589790
17   63.397905  122.529972        0         0        122.529972
18    0.000000   14.220998        1         1         69.189141
19    0.000000    6.452228        1         1         25.692165
20   61.392354  124.636203        0         0        124.636203
21   66.313846  139.627156        1         1        139.627156
22   68.702261   68.702261        0         1         68.702261
23   51.514347  169.501362        1         1        169.501362
24    0.000000   18.067317        1         1         43.826857
25   67.253903  171.637078        1         1        171.637078
26   55.836455 1256.486479        0         0       1256.486479
27   62.401813  255.087283        1         1        255.087283
28   13.806418   26.855750        1         1         70.753164
29    0.000000   22.458668        1         1         47.324274
30    0.000000   10.001942        1         1         37.448463
31   43.994075  393.936462        1         1        393.936462
32   44.257919  198.605032        0         0        198.605032
33  740.282761  740.282761        0         1        740.282761
34    0.000000    5.288882        1         1         41.864547
35  784.644493  784.644493        0         1        784.644493
36   57.833264  236.812356        1         1        236.812356
37   44.405032  118.320580        1         1        118.320580
38   60.339941   88.567045        0         0         88.567045
39   23.483773   23.483773        0         1         23.483773
40   50.822177  126.431820        1         1        126.431820
41   10.406605   27.299444        1         1         62.602043
42   31.452658   38.547293        1         1         93.333288
43   74.284039   74.284039        0         1         74.284039
44   58.495636  640.122343        0         0        640.122343
45  441.267846  441.267846        0         1        441.267846
46    4.559497    4.559497        0         1          4.559497
47    6.351916   15.105162        0         0         15.105162
48   98.334550   98.334550        0         1         98.334550
49   28.945032   28.945032        0         1         28.945032
50   21.207587   27.456203        1         1         54.344555
51  592.842273  592.842273        0         1        592.842273
52   57.523705  351.452520        0         0        351.452520
53   13.813128   23.774303        0         0         23.774303
54   42.118498  218.127870        0         0        218.127870
55   25.180797   37.423666        1         1         46.152735
56   86.119244   86.119244        0         1         86.119244
57    1.988408   10.676441        1         1         24.562312
58   18.422418   28.992742        1         1         83.537209
59   43.070802  262.361687        0         0        262.361687
60   44.015663   82.387699        1         1         82.387699
61   28.363350   43.372700        1         1         75.838343
62   24.332130   39.750855        1         1         51.264510
63   10.311492   23.305992        1         1        109.617124
64  578.606680  578.606680        0         1        578.606680
65   48.880661   98.573696        1         1         98.573696
66   17.764111   22.949871        0         0         22.949871
67    0.000000    9.814545        1         1         38.717755
68    8.368873   18.387088        1         1         34.598347
69   36.844833   36.844833        0         1         36.844833
70   58.402467  146.888703        0         0        146.888703
71   51.159223  111.937406        0         0        111.937406
72    4.286111   18.676029        1         1         49.385178
73   41.892671   41.892671        0         1         41.892671
74  441.839517  441.839517        0         1        441.839517
75    6.349109   19.946106        1         1         50.613192
76    0.000000   12.134599        1         1         36.897521
77   48.979064  199.097022        1         1        199.097022
78   45.312808   78.362028        1         1         78.362028
79   13.866636   24.015701        1         1         78.992840
80   45.889186  310.628446        0         0        310.628446
81   43.214534  153.621560        0         0        153.621560
82   61.978916  184.377737        1         1        184.377737
83    0.000000   13.006049        1         1         37.637840
84    7.706271   22.007453        1         1         22.007453
85   31.304183  581.888977        1         1        581.888977
86   42.448598 1025.332299        1         1       1025.332299
87   57.535906  220.669503        1         1        220.669503
88  151.821370  151.821370        0         1        151.821370
89    4.453314    9.958641        1         1         79.412657
90   52.888434  587.008205        0         0        587.008205
91  213.806958  213.806958        0         1        213.806958
92    5.312751   13.441844        1         1        101.706729
93   35.267387  115.065046        1         1        115.065046
94    9.543722   19.822736        1         1         69.717843
95   21.496308   39.373020        1         1         70.273354
96   34.519394  108.977607        1         1        108.977607
97   20.890525  380.901968        1         1        380.901968
98   40.268052  781.901697        0         0        781.901697
99   17.755257   34.837068        1         1         51.088128
100  48.929981  126.244265        1         1        126.244265
    observed.illtime
1        -9.00000000
2       101.90947173
3       190.10216648
4         4.65995317
5       131.19503453
6        -9.00000000
7       122.04493645
8       267.73358420
9        11.03813662
10      137.40899130
11        0.86146020
12        2.67630476
13       -9.00000000
14       20.45832961
15       61.84556806
16       15.65859865
17      122.52997172
18        4.06946551
19        3.38316431
20      124.63620256
21      102.02700256
22       -9.00000000
23      109.27172666
24        7.89191586
25      119.83714392
26     1256.48647890
27      210.77808132
28       18.14352533
29       13.57466478
30        1.62731904
31      361.84345337
32       -9.00000000
33       -9.00000000
34        0.05336584
35       -9.00000000
36      226.41854836
37       60.49822901
38       -9.00000000
39       -9.00000000
40       67.49257339
41       20.59079434
42       32.36887671
43       -9.00000000
44      640.12234300
45       -9.00000000
46       -9.00000000
47       15.10516152
48       -9.00000000
49       -9.00000000
50       26.50848230
51       -9.00000000
52      351.45252019
53       21.38756092
54      218.12787012
55       26.98488634
56       -9.00000000
57        9.12154687
58       24.47258117
59       -9.00000000
60       57.60509430
61       36.11730554
62       39.30049404
63       18.23075466
64       -9.00000000
65       90.47270074
66       18.52683842
67        6.23839323
68       15.34737774
69       -9.00000000
70      146.88870272
71      111.93740595
72       15.84479750
73       -9.00000000
74       -9.00000000
75        7.39312051
76        9.47284215
77      149.04040282
78       47.58812134
79       14.26487606
80      276.72265891
81      153.62156024
82      151.33708044
83        5.24991635
84       18.35248584
85      567.56372114
86      972.99050780
87      190.04848340
88       -9.00000000
89        5.38295320
90       -9.00000000
91       -9.00000000
92       11.62281739
93       36.67511014
94       17.10487674
95       22.52359451
96       75.57113604
97      355.11687678
98      781.90169741
99       27.26871389
100      92.14365932

SmoothHazard documentation built on May 2, 2019, 4:43 p.m.