Description Usage Arguments Details See Also Examples
Simulate data from an illness-death model with interval censored event times and covariates
1 | simulateIDM(n = 100)
|
n |
number of observations |
Simulate data from an illness-death model with interval censored event times and covariates for the purpose of illustrating the help pages of the SmoothHazard package. See the body of the function for details, i.e., evaluate simulateIDM
idmModel sim.idmModel
1 2 | simulateIDM
simulateIDM(100)
|
Loading required package: prodlim
function (n = 100)
{
m <- idmModel(shape.waittime = 2, scale.lifetime = 1/2000,
scale.waittime = 1/3000, scale.illtime = 1/7000, scale.censtime = 1/1000,
n.inspections = 5, schedule = 10, punctuality = 5)
lava::distribution(m, "X1") <- lava::binomial.lvm(p = 0.3)
lava::distribution(m, "X2") <- lava::normal.lvm(mean = 120,
sd = 20)
lava::distribution(m, "X3") <- lava::normal.lvm(mean = 50,
sd = 20)
lava::regression(m, to = "latent.illtime", from = "X1") <- 0.7
lava::regression(m, to = "latent.illtime", from = "X2") <- 0.07
lava::regression(m, to = "latent.illtime", from = "X3") <- -0.1
lava::regression(m, to = "latent.waittime", from = "X1") <- 0.8
lava::regression(m, to = "latent.lifetime", from = "X1") <- 0.7
lava::sim(m, n)
}
<environment: namespace:SmoothHazard>
censtime X1 X2 X3 illtime illstatus lifetime
1 1493.96952 0 109.77755 60.63871803 -9.00000000 0 3268.664940
2 1639.77718 0 117.29686 45.28633089 101.90947173 1 118.762622
3 469.45273 0 114.67892 56.76848488 190.10216648 1 212.019245
4 286.67124 0 123.90480 42.62273214 4.65995317 1 92.806191
5 258.98340 1 117.37217 67.10183614 131.19503453 1 167.378905
6 1482.64542 0 114.19940 82.43241735 -9.00000000 0 2475.695409
7 612.84198 0 130.89000 54.87007303 122.04493645 1 180.276067
8 409.19945 1 121.89506 52.63373433 267.73358420 1 290.710763
9 886.04569 1 110.26603 33.61339500 11.03813662 1 46.451478
10 809.28219 1 131.90071 59.09547248 137.40899130 1 188.894604
11 1348.35392 0 137.54954 23.02510173 0.86146020 1 41.576791
12 3786.29046 1 139.90559 32.73149650 2.67630476 1 38.477688
13 540.51665 0 101.01885 29.29664303 -9.00000000 0 69.131347
14 20.45833 0 131.08248 72.49159783 277.83833736 1 279.189509
15 661.26951 1 111.69115 30.86817240 61.84556806 1 87.398326
16 867.67659 0 133.42959 22.77327272 15.65859865 1 23.589790
17 122.52997 1 122.41774 61.07513263 638.92775583 1 663.540469
18 964.27382 0 140.28408 33.42970285 4.06946551 1 69.189141
19 101.30829 1 125.70528 32.89047563 3.38316431 1 25.692165
20 124.63620 0 116.81232 51.32649246 446.27752621 1 514.693704
21 715.86443 0 113.74552 33.91929467 102.02700256 1 139.627156
22 1055.65418 0 113.16236 47.53078281 -9.00000000 0 68.702261
23 634.79653 0 108.35057 29.77308271 109.27172666 1 169.501362
24 532.69183 0 116.83635 25.64877544 7.89191586 1 43.826857
25 4410.91377 1 101.29673 40.10651615 119.83714392 1 171.637078
26 1256.48648 0 106.98680 59.88130504 2613.00939965 1 2666.106858
27 1008.99348 1 116.39476 57.51195213 210.77808132 1 255.087283
28 201.13788 1 114.81665 36.45232532 18.14352533 1 70.753164
29 2515.38150 0 134.51071 25.83843013 13.57466478 1 47.324274
30 2323.69089 1 131.89288 47.75134043 1.62731904 1 37.448463
31 789.45525 1 112.74614 41.20497238 361.84345337 1 393.936462
32 198.60503 0 94.06169 52.84328019 -9.00000000 0 1135.168873
33 2035.90419 0 109.15161 56.60422498 -9.00000000 0 740.282761
34 1312.60059 0 123.05399 -9.03194992 0.05336584 1 41.864547
35 1872.43813 0 118.54371 57.89637831 -9.00000000 0 784.644493
36 1572.65057 0 83.92197 20.88742310 226.41854836 1 236.812356
37 1777.21031 0 134.35646 48.18731560 60.49822901 1 118.320580
38 88.56705 0 97.31681 58.32162734 -9.00000000 0 929.543630
39 612.72060 0 138.87441 43.10329736 -9.00000000 0 23.483773
40 312.76169 0 119.19572 30.89928035 67.49257339 1 126.431820
41 2849.77796 1 109.24663 37.23886756 20.59079434 1 62.602043
42 353.87079 0 127.53778 42.30282926 32.36887671 1 93.333288
43 1727.74736 0 97.71949 56.66066417 -9.00000000 0 74.284039
44 640.12234 0 86.43871 40.93405712 686.24558902 1 724.884760
45 506.52687 1 124.53812 55.32535478 -9.00000000 0 441.267846
46 1214.42861 1 119.58726 60.16639899 -9.00000000 0 4.559497
47 15.10516 1 97.24547 48.82492506 788.17383751 1 802.023159
48 1175.14906 1 131.17300 104.48967470 -9.00000000 0 98.334550
49 2014.50204 1 125.58443 62.60086499 -9.00000000 0 28.945032
50 1184.52858 1 141.21725 43.80741632 26.50848230 1 54.344555
51 3116.29411 1 100.54627 92.91461562 -9.00000000 0 592.842273
52 351.45252 0 125.78927 51.84507949 619.31417677 1 676.898185
53 23.77430 0 108.34185 49.35792506 21.38756092 1 91.229982
54 218.12787 0 135.96467 64.80261652 307.57878354 1 357.043965
55 1501.56134 1 114.43539 45.52256176 26.98488634 1 46.152735
56 1972.80022 0 118.44394 40.78412393 -9.00000000 0 86.119244
57 732.70134 1 146.89477 56.84240078 9.12154687 1 24.562312
58 1830.40249 0 146.54982 52.32448199 24.47258117 1 83.537209
59 262.36169 1 117.58018 56.28542897 -9.00000000 0 985.586511
60 547.37603 1 121.10303 56.61459119 57.60509430 1 82.387699
61 479.84239 0 126.93031 45.72940760 36.11730554 1 75.838343
62 122.91338 0 117.41383 39.64743545 39.30049404 1 51.264510
63 1145.47276 0 145.60160 47.32353158 18.23075466 1 109.617124
64 2137.19256 0 78.32416 34.81658680 -9.00000000 0 578.606680
65 832.95432 1 119.41137 50.90570180 90.47270074 1 98.573696
66 22.94987 1 112.46628 20.84197509 18.52683842 1 28.260944
67 268.90162 1 146.25882 38.91646749 6.23839323 1 38.717755
68 1549.05393 0 113.47901 19.61862282 15.34737774 1 34.598347
69 553.98617 1 57.06778 43.97662082 -9.00000000 0 36.844833
70 146.88870 0 95.39919 42.03864599 683.04477589 1 690.285038
71 111.93741 0 110.24193 44.90554313 124.78270470 1 196.182956
72 128.55679 1 131.55753 54.43565355 15.84479750 1 49.385178
73 1096.77701 0 131.99397 75.40418685 -9.00000000 0 41.892671
74 970.43160 0 145.17983 81.97237559 -9.00000000 0 441.839517
75 5148.19875 1 118.25445 38.58619071 7.39312051 1 50.613192
76 609.48494 1 153.80265 60.30847415 9.47284215 1 36.897521
77 199.91967 0 107.14291 46.14505282 149.04040282 1 199.097022
78 2615.18363 1 105.03305 24.81481075 47.58812134 1 78.362028
79 1483.25017 0 145.63266 70.02651906 14.26487606 1 78.992840
80 310.62845 0 95.06120 39.69217118 276.72265891 1 312.990632
81 153.62156 1 136.84952 88.69507880 179.34890892 1 205.753165
82 4098.68065 0 107.84447 52.96750076 151.33708044 1 184.377737
83 88.71403 0 118.01893 13.22509407 5.24991635 1 37.637840
84 525.98220 1 117.72427 38.98775357 18.35248584 1 22.007453
85 3334.04653 0 131.27462 58.71516672 567.56372114 1 581.888977
86 1196.79535 0 94.94021 47.06907805 972.99050780 1 1025.332299
87 535.94450 0 106.07183 63.66829305 190.04848340 1 220.669503
88 157.82753 0 110.50796 38.62576768 -9.00000000 0 151.821370
89 173.54997 0 141.83353 78.35780810 5.38295320 1 79.412657
90 587.00821 0 107.78982 63.89825096 -9.00000000 0 2055.244270
91 368.12949 1 113.12716 79.61303936 -9.00000000 0 213.806958
92 299.74346 0 130.74208 72.46178703 11.62281739 1 101.706729
93 603.87826 0 115.96173 25.25744676 36.67511014 1 115.065046
94 866.69528 0 129.35159 30.66769055 17.10487674 1 69.717843
95 2171.64609 0 117.16539 16.76784688 22.52359451 1 70.273354
96 114.68028 0 115.65293 39.28802544 75.57113604 1 108.977607
97 984.60842 1 93.76191 32.92419413 355.11687678 1 380.901968
98 781.90170 0 129.10804 74.42653068 1076.76213582 1 1097.858334
99 328.24586 1 102.99470 18.66412757 27.26871389 1 51.088128
100 1428.29725 0 74.57253 -0.09778986 92.14365932 1 126.244265
L R seen.ill seen.exit observed.lifetime
1 52.815982 1493.969522 0 0 1493.969522
2 29.837143 118.762622 1 1 118.762622
3 54.967536 212.019245 1 1 212.019245
4 0.000000 8.485568 1 1 92.806191
5 55.033640 167.378905 1 1 167.378905
6 58.157176 1482.645422 0 0 1482.645422
7 70.978556 180.276067 1 1 180.276067
8 32.091585 290.710763 1 1 290.710763
9 8.747425 12.102303 1 1 46.451478
10 52.119043 188.894604 1 1 188.894604
11 0.000000 3.525666 1 1 41.576791
12 0.000000 12.829151 1 1 38.477688
13 69.131347 69.131347 0 1 69.131347
14 14.584659 20.458330 0 0 20.458330
15 43.625730 87.398326 1 1 87.398326
16 11.999272 16.923446 1 1 23.589790
17 63.397905 122.529972 0 0 122.529972
18 0.000000 14.220998 1 1 69.189141
19 0.000000 6.452228 1 1 25.692165
20 61.392354 124.636203 0 0 124.636203
21 66.313846 139.627156 1 1 139.627156
22 68.702261 68.702261 0 1 68.702261
23 51.514347 169.501362 1 1 169.501362
24 0.000000 18.067317 1 1 43.826857
25 67.253903 171.637078 1 1 171.637078
26 55.836455 1256.486479 0 0 1256.486479
27 62.401813 255.087283 1 1 255.087283
28 13.806418 26.855750 1 1 70.753164
29 0.000000 22.458668 1 1 47.324274
30 0.000000 10.001942 1 1 37.448463
31 43.994075 393.936462 1 1 393.936462
32 44.257919 198.605032 0 0 198.605032
33 740.282761 740.282761 0 1 740.282761
34 0.000000 5.288882 1 1 41.864547
35 784.644493 784.644493 0 1 784.644493
36 57.833264 236.812356 1 1 236.812356
37 44.405032 118.320580 1 1 118.320580
38 60.339941 88.567045 0 0 88.567045
39 23.483773 23.483773 0 1 23.483773
40 50.822177 126.431820 1 1 126.431820
41 10.406605 27.299444 1 1 62.602043
42 31.452658 38.547293 1 1 93.333288
43 74.284039 74.284039 0 1 74.284039
44 58.495636 640.122343 0 0 640.122343
45 441.267846 441.267846 0 1 441.267846
46 4.559497 4.559497 0 1 4.559497
47 6.351916 15.105162 0 0 15.105162
48 98.334550 98.334550 0 1 98.334550
49 28.945032 28.945032 0 1 28.945032
50 21.207587 27.456203 1 1 54.344555
51 592.842273 592.842273 0 1 592.842273
52 57.523705 351.452520 0 0 351.452520
53 13.813128 23.774303 0 0 23.774303
54 42.118498 218.127870 0 0 218.127870
55 25.180797 37.423666 1 1 46.152735
56 86.119244 86.119244 0 1 86.119244
57 1.988408 10.676441 1 1 24.562312
58 18.422418 28.992742 1 1 83.537209
59 43.070802 262.361687 0 0 262.361687
60 44.015663 82.387699 1 1 82.387699
61 28.363350 43.372700 1 1 75.838343
62 24.332130 39.750855 1 1 51.264510
63 10.311492 23.305992 1 1 109.617124
64 578.606680 578.606680 0 1 578.606680
65 48.880661 98.573696 1 1 98.573696
66 17.764111 22.949871 0 0 22.949871
67 0.000000 9.814545 1 1 38.717755
68 8.368873 18.387088 1 1 34.598347
69 36.844833 36.844833 0 1 36.844833
70 58.402467 146.888703 0 0 146.888703
71 51.159223 111.937406 0 0 111.937406
72 4.286111 18.676029 1 1 49.385178
73 41.892671 41.892671 0 1 41.892671
74 441.839517 441.839517 0 1 441.839517
75 6.349109 19.946106 1 1 50.613192
76 0.000000 12.134599 1 1 36.897521
77 48.979064 199.097022 1 1 199.097022
78 45.312808 78.362028 1 1 78.362028
79 13.866636 24.015701 1 1 78.992840
80 45.889186 310.628446 0 0 310.628446
81 43.214534 153.621560 0 0 153.621560
82 61.978916 184.377737 1 1 184.377737
83 0.000000 13.006049 1 1 37.637840
84 7.706271 22.007453 1 1 22.007453
85 31.304183 581.888977 1 1 581.888977
86 42.448598 1025.332299 1 1 1025.332299
87 57.535906 220.669503 1 1 220.669503
88 151.821370 151.821370 0 1 151.821370
89 4.453314 9.958641 1 1 79.412657
90 52.888434 587.008205 0 0 587.008205
91 213.806958 213.806958 0 1 213.806958
92 5.312751 13.441844 1 1 101.706729
93 35.267387 115.065046 1 1 115.065046
94 9.543722 19.822736 1 1 69.717843
95 21.496308 39.373020 1 1 70.273354
96 34.519394 108.977607 1 1 108.977607
97 20.890525 380.901968 1 1 380.901968
98 40.268052 781.901697 0 0 781.901697
99 17.755257 34.837068 1 1 51.088128
100 48.929981 126.244265 1 1 126.244265
observed.illtime
1 -9.00000000
2 101.90947173
3 190.10216648
4 4.65995317
5 131.19503453
6 -9.00000000
7 122.04493645
8 267.73358420
9 11.03813662
10 137.40899130
11 0.86146020
12 2.67630476
13 -9.00000000
14 20.45832961
15 61.84556806
16 15.65859865
17 122.52997172
18 4.06946551
19 3.38316431
20 124.63620256
21 102.02700256
22 -9.00000000
23 109.27172666
24 7.89191586
25 119.83714392
26 1256.48647890
27 210.77808132
28 18.14352533
29 13.57466478
30 1.62731904
31 361.84345337
32 -9.00000000
33 -9.00000000
34 0.05336584
35 -9.00000000
36 226.41854836
37 60.49822901
38 -9.00000000
39 -9.00000000
40 67.49257339
41 20.59079434
42 32.36887671
43 -9.00000000
44 640.12234300
45 -9.00000000
46 -9.00000000
47 15.10516152
48 -9.00000000
49 -9.00000000
50 26.50848230
51 -9.00000000
52 351.45252019
53 21.38756092
54 218.12787012
55 26.98488634
56 -9.00000000
57 9.12154687
58 24.47258117
59 -9.00000000
60 57.60509430
61 36.11730554
62 39.30049404
63 18.23075466
64 -9.00000000
65 90.47270074
66 18.52683842
67 6.23839323
68 15.34737774
69 -9.00000000
70 146.88870272
71 111.93740595
72 15.84479750
73 -9.00000000
74 -9.00000000
75 7.39312051
76 9.47284215
77 149.04040282
78 47.58812134
79 14.26487606
80 276.72265891
81 153.62156024
82 151.33708044
83 5.24991635
84 18.35248584
85 567.56372114
86 972.99050780
87 190.04848340
88 -9.00000000
89 5.38295320
90 -9.00000000
91 -9.00000000
92 11.62281739
93 36.67511014
94 17.10487674
95 22.52359451
96 75.57113604
97 355.11687678
98 781.90169741
99 27.26871389
100 92.14365932
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