StudyPrior: Distributions for Historical Information

Implements useful prior distributions for incorporating data from previous studies into a new study, such as power priors, meta-analytic priors.

Author
Isaac Gravestock
Date of publication
2016-11-27 18:49:34
Maintainer
Isaac Gravestock <isaac.gravestock@uzh.ch>
License
GPL (>= 2)
Version
0.0.3

View on R-Forge

Man pages

binom.Beta.EB
Empirical Bayes Beta Prior for Binomial Data
binom.Bias.FB
Full Bayes Bias Prior for Binomial Data
binom.MAP.EB
Empirical Bayes Meta-Analytic Prior for Binomial Data
binom.MAP.FB
Full Bayesian Meta-Analytic Prior for Binomial Data
binom.PP.EB
Empirical Bayes Power Prior for Binomial Data
binom.PP.EB.Beta
Empirical Bayes Power Prior for Binomial Data
binom.PP.EB.Sep
Empirical Bayes Power Prior for Binomial Data Esimated...
binom.PP.FB
Full Bayes Power Prior for Binomial Data
binom.PP.FB.INLA
Title
binom.PP.FB.MC
Title
binom.PP.FB.MC.BE
Title
binom.prior
Prior distribution for binomial data
bool.mat.plot
Plot a boolean matrix in two colours
calc.bias
Calculate bias
calc.coverage
Coverage using prior using the Bayarri thing
calc.MSE
Calculate mean squared error
calc.power
Calculate power
conj.approx
Mixture distribution
conj.approx2
Approximate distribution with mixture model
conj.approx.robust
Approximate distribution with mixture model
create.fun.list
Create mixture model
dbinomc
Extension of the binomial distribution to allow real values...
ess.fun.list
Calculate the effective sample size of mixture model
eval.fun.list
Get density of mixture
mean.fun.list
Calculate the mean of mixture model
mix.plot
Plot the mixture model
normal.PP.FB.MC
Normal power prior with full Bayes by Monte Carlo
p.fun.list
Probabilty density function
plot.fun.list
Plot mixture model
posterior.fun.list
Calculate posterior mixture model
print.fun.list
Print mixture model
q.fun.list
Quantile function
sample.fun.list
Sample from the mixture distribution
sig.matrix
Title
update.fun.list
Update parameters or weights in mixture model
var.fun.list
Calculate the variance of mixture model
VP
Print messages if verbose=TRUE in calling function.

Files in this package

StudyPrior/DESCRIPTION
StudyPrior/MultiPriorPackage.Rproj
StudyPrior/NAMESPACE
StudyPrior/R
StudyPrior/R/Bias.R
StudyPrior/R/Coverage.R
StudyPrior/R/MSE1.R
StudyPrior/R/Power.R
StudyPrior/R/VP.R
StudyPrior/R/approx.2.R
StudyPrior/R/approx.3.R
StudyPrior/R/approx.3.robust.R
StudyPrior/R/approx.R
StudyPrior/R/binom.Beta.EB.R
StudyPrior/R/binom.Bias.R
StudyPrior/R/binom.MAP.EB.R
StudyPrior/R/binom.MAP.FB.R
StudyPrior/R/binom.PP.EB.Beta.R
StudyPrior/R/binom.PP.EB.R
StudyPrior/R/binom.PP.EB.Sep.R
StudyPrior/R/binom.PP.FB.INLA.R
StudyPrior/R/binom.PP.FB.MC.BE.R
StudyPrior/R/binom.PP.FB.MC.R
StudyPrior/R/binom.PP.FB.R
StudyPrior/R/binom.continuous.R
StudyPrior/R/binom.prior.R
StudyPrior/R/bool.mat.plot.R
StudyPrior/R/fun.list.R
StudyPrior/R/mix.plot.R
StudyPrior/R/normal.PP.FB.MC.R
StudyPrior/R/sig.matrix.R
StudyPrior/Test
StudyPrior/Test/Study3.R
StudyPrior/Test/Study4.R
StudyPrior/Test/Study5.R
StudyPrior/Test/Study5nr.R
StudyPrior/man
StudyPrior/man/VP.Rd
StudyPrior/man/binom.Beta.EB.Rd
StudyPrior/man/binom.Bias.FB.Rd
StudyPrior/man/binom.MAP.EB.Rd
StudyPrior/man/binom.MAP.FB.Rd
StudyPrior/man/binom.PP.EB.Beta.Rd
StudyPrior/man/binom.PP.EB.Rd
StudyPrior/man/binom.PP.EB.Sep.Rd
StudyPrior/man/binom.PP.FB.INLA.Rd
StudyPrior/man/binom.PP.FB.MC.BE.Rd
StudyPrior/man/binom.PP.FB.MC.Rd
StudyPrior/man/binom.PP.FB.Rd
StudyPrior/man/binom.prior.Rd
StudyPrior/man/bool.mat.plot.Rd
StudyPrior/man/calc.MSE.Rd
StudyPrior/man/calc.bias.Rd
StudyPrior/man/calc.coverage.Rd
StudyPrior/man/calc.power.Rd
StudyPrior/man/conj.approx.Rd
StudyPrior/man/conj.approx.robust.Rd
StudyPrior/man/conj.approx2.Rd
StudyPrior/man/create.fun.list.Rd
StudyPrior/man/dbinomc.Rd
StudyPrior/man/ess.fun.list.Rd
StudyPrior/man/eval.fun.list.Rd
StudyPrior/man/mean.fun.list.Rd
StudyPrior/man/mix.plot.Rd
StudyPrior/man/normal.PP.FB.MC.Rd
StudyPrior/man/p.fun.list.Rd
StudyPrior/man/plot.fun.list.Rd
StudyPrior/man/posterior.fun.list.Rd
StudyPrior/man/print.fun.list.Rd
StudyPrior/man/q.fun.list.Rd
StudyPrior/man/sample.fun.list.Rd
StudyPrior/man/sig.matrix.Rd
StudyPrior/man/update.fun.list.Rd
StudyPrior/man/var.fun.list.Rd