Description Usage Details Resources Author(s) Examples
View source: R/supercurveGUI.R
Graphical User Interface for the SuperCurve package.
1 2 | supercurveGUI()
scui()
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The function supercurveGUI
launches a Graphical User Interface
for the SuperCurve package. The GUI uses Tk widgets (via the
R-Tcl/Tk interface by Peter Dalgaard) in order to provide a simple
interface to the SuperCurve functions for analyzing reverse phase
protein lysate arrays.
The function scui
is an alias for the aforementioned function.
If set, the environment variable SC_DIR will be used as the initial location for the directory containing quantification files.
The Tk options database is loaded from user-specific defaults files, such as ‘.Xdefaults’, and resource databases loaded into the X server. The package will attempt to load its resources upon startup, following the X11R5 method of merging app-default files from multiple sources. The standard X11 paths are searched first, followed by paths specified by the environment variables XFILESEARCHPATH, XAPPLRESDIR, XUSERFILESEARCHPATH, respectively. Unlike X11, ALL matching files will be loaded, not just the first.
One way to make use of the options database is to create a file named
‘supercurveGUI.ad’ in your home directory, specifying any desired
resources. Set your XUSERFILESEARCHPATH environment variable within
R with the command:
Sys.setenv(XUSERFILESEARCHPATH=file.path(path.expand("~"), "%N.ad"))
For example, to cause SuperCurve to convert each quantification file
as it's read from a single subgrid physical layout into its actual logical
one by default, add the following resource value to the app-defaults file
mentioned above:
*software: superslide
P. Roebuck proebuck@mdanderson.org
1 2 3 4 5 6 | ## Not run:
supercurveGUI()
# -or-
scui()
## End(Not run)
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