available_ranges: Takes as parameters three strings, representing an authority,...

In SynergizeR: Interface to The Synergizer service for translating between sets of biological identifiers.

Description

Takes as parameters three strings, representing an authority, a species, and a domain namespace, and returns a character vector corresponding to the currently available range namespaces for the chosen authority, species, and domain namespace.

Usage

  available_ranges(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol")

Arguments

authority	A character containing any authoritative sources of identifier-mapping information.
species	A character containing the Species. Note that the range of species supported depends on the choice of authority. Examples: Homo sapiens, Mus musculus.
domain	This is the "namespace" (naming scheme) of the database identifiers the user wishes to translate. Examples: embl, ipi

Value

A vector containing the currently available range namespaces for the chosen authority, species, and domain namespace.

References

http://llama.mshri.on.ca/synergizer/translate/

Examples

## Not run: 
library('SynergizerR')
available_ranges('ensembl','homo sapiens','hgnc_symbol') 
## End(Not run)

SynergizeR documentation built on May 2, 2019, 4:48 p.m.