Description Usage Arguments Details Author(s) References
TAPS_freq generates a summary of aberration frequencies in several samples (on which TAPS_call has completed).
1 | TAPS_freq(samples='all', outdir='frequencies', hg19=T)
|
samples |
Default is 'all'. Alternatively, supply a (boolean, integer or sample name) vector of included samples. |
outdir |
All results are written to this directory. |
hg19 |
The reference genome 'hg19' will be used for genes. If FALSE, reverts to hg18. |
This function summarizes aberration frequencies over multiple samples. Run from the directory containing sample folders. Make sure TAPS_call() completed successfully on all (included) samples.
Markus Mayrhofer, markus.mayrhofer@medsci.uu.se
Hanna Goransson Kultima, hanna.goransson.kultima@medsci.uu.se
Sebastian DiLorenzo, sebastian.dilorenzo@medsci.uu.se
Bjorn Viklund, bjorn.viklund@medsci.uu.se
http://www.biomedcentral.com/content/pdf/gb-2011-12-10-r108.pdf
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