Thresher: Threshing and Reaping for Principal Components

The Thresher package defines the classes used to identify outliers (threshing) and compute the number of significant principal components and number of clusters (reaping) in a joint application of PCA and hierarchical clustering.

Author
Kevin R. Coombes
Date of publication
2016-05-16 13:43:31
Maintainer
Kevin R. Coombes <krc@silicovore.com>
License
Apache License (== 2.0)
Version
0.11.0
URLs

View on R-Forge

Man pages

fit-or-miss-class
Class '"fit or miss"'
getColors-methods
~~ Methods for Function 'getColors' ~~
getSplit-methods
~~ Methods for Function 'getSplit' ~~
heat-methods
~~ Methods for Function 'heat' ~~
image-methods
~~ Methods for Function 'image' ~~
makeFigures-methods
~~ Methods for Function 'makeFigures' ~~
matchLabels
Match Arbitrary Class Assignments Across Methods
movMF-class
Class '"movMF"'
number-or-miss-class
Class '"number or miss"'
palettes
Color Palettes Used By Thresher Classes
plot-methods
~~ Methods for Function 'plot' ~~
Reaper
Reaper
Reaper-class
Class '"Reaper"'
scatter-methods
~~ Methods for Function 'scatter' ~~
screeplot-methods
~~ Methods for Function 'screeplot' ~~
SignalSet-class
Class '"SignalSet"'
SimThresher
simt
SimThresher-class
Class '"SimThresher"'
summary-methods
~~ Methods for Function 'summary' ~~
Thresher
Thresher
Thresher-class
Class '"Thresher"'
Thresher-package
What the package does (short line) ~~ package title ~~
unitize
Convert a Vector to Unit Length

Files in this package

Thresher/DESCRIPTION
Thresher/NAMESPACE
Thresher/NEWS
Thresher/R
Thresher/R/01-labelMatcher.R
Thresher/R/02-thresher.R
Thresher/R/03-SimThesher.R
Thresher/R/04-reaper.R
Thresher/TODO
Thresher/data
Thresher/data/savedSims.rda
Thresher/man
Thresher/man/Reaper-class.Rd
Thresher/man/Reaper.Rd
Thresher/man/SignalSet-class.Rd
Thresher/man/SimThresher-class.Rd
Thresher/man/SimThresher.Rd
Thresher/man/Thresher-class.Rd
Thresher/man/Thresher-package.Rd
Thresher/man/Thresher.Rd
Thresher/man/fit-or-miss-class.Rd
Thresher/man/getColors-methods.Rd
Thresher/man/getSplit-methods.Rd
Thresher/man/heat-methods.Rd
Thresher/man/image-methods.Rd
Thresher/man/makeFigures-methods.Rd
Thresher/man/matchLabels.Rd
Thresher/man/movMF-class.Rd
Thresher/man/number-or-miss-class.Rd
Thresher/man/palettes.Rd
Thresher/man/plot-methods.Rd
Thresher/man/scatter-methods.Rd
Thresher/man/screeplot-methods.Rd
Thresher/man/summary-methods.Rd
Thresher/man/unitize.Rd
Thresher/tests
Thresher/tests/00-Auer-Gervini_final.txt
Thresher/tests/01-label.R
Thresher/tests/01-label.Rout.save
Thresher/tests/02-thresh.R
Thresher/tests/02-thresh.Rout.save
Thresher/tests/02-thresher_final.txt
Thresher/tests/04-reap.R
Thresher/tests/04-reap.Rout.save