TopKLists: Inference, Aggregation and Visualization for Top-K Ranked Lists
Version 1.0.6

For multiple ranked input lists (full or partial) representing the same set of N objects, the package TopKLists offers (1) statistical inference on the lengths of informative top-k lists, (2) stochastic aggregation of full or partial lists, and (3) graphical tools for the statistical exploration of input lists, and for the visualization of aggregation results.

Browse man pages Browse package API and functions Browse package files

AuthorMichael G. Schimek, Eva Budinska, Jie Ding, Karl G. Kugler, Vendula Svendova, Shili Lin
Date of publication2015-11-09 14:41:55
MaintainerMichael G. Schimek <michael.schimek@medunigraz.at>
LicenseLGPL-3
Version1.0.6
URL http://topklists.r-forge.r-project.org
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("TopKLists", repos="http://R-Forge.R-project.org")

Man pages

aggmap: Aggregation map for the integration of truncated lists
borda: Borda based rank aggregation
borda.plot: Plot Borda's scores against ranks
breast: Sample data from breast cancer expression
calculate.maxK: The main function for TopKInference
CEMC: CEMC based rank aggregation
compute.stream: Calculates point of degeneration j0 into noise of the Idata,...
deltaplot: An exploratory plot of discordance for delta selection.
geo.mean: Calculate the geometric mean
init.p: Initialization method for probabilities
j0.multi: Function returning an overall point j0 of degeneration into...
kendall2Lists: Calculate modified Kendall's tau distance
kendallMLists: KendallMLists
kendall.plot: Plot of the Kendall Criterion values
l2norm: Calculate the L2 norm
MC: Markov chain based rank aggregation
mc.plot: Plot of the ordered stationary probabilities
mc.ranks: MC based rank aggregation
prepare.idata: Prepare Idata vector of 0's and 1's
spearman: Modified Spearman's footrule distance
TopKListsGUI: TopKListsGUI for inference and visualization
TopKLists-package: Inference, aggregation and visualization for top-_k_ ranked...
TopKSample: Sampler to generate N top-k lists according to p
TopKSpaceSampleInput: Sample input for TopKSpace functions
trans.matrix: Compute transition matrices

Functions

Borda Man page Source code
Borda.plot Man page Source code
CEMC Man page
Kendall.plot Man page Source code
Kendall2Lists Man page
Kendall2Lists.c Man page
KendallMLists Man page Source code
MC Man page Source code
MC.plot Man page Source code
MC.ranks Man page Source code
Spearman Man page
TopKLists Man page
TopKListsGUI Man page Source code
TopKSample Man page
TopKSample.c Man page
TopKSpaceSampleInput Man page
aggmap Man page Source code
breast Man page
calculate.maxK Man page Source code
calculateVennValues Source code
compute.stream Man page Source code
deltaplot Man page Source code
determineDeltaRange Source code
geo.mean Man page Source code
init.p Man page
input Man page
j0.multi Man page Source code
l2norm Man page Source code
moderate.deviation Source code
pjminus Source code
pjplus Source code
prepare.idata Man page Source code
prepareDeltaplot Source code
sCalculatable Source code
space Man page
trans.matrix Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/TopKCEMC.R
R/TopKGraphics.R
R/TopKInference.R
R/TopKSpace.R
build
build/vignette.rds
data
data/TopKSpaceSampleInput.rda
data/breast.rda
data/datalist
inst
inst/CITATION
inst/doc
inst/doc/TopKLists.Rnw
inst/doc/TopKLists.pdf
man
man/CEMC.Rd
man/MC.Rd
man/TopKLists-package.Rd
man/TopKListsGUI.Rd
man/TopKSample.Rd
man/TopKSpaceSampleInput.Rd
man/aggmap.Rd
man/borda.Rd
man/borda.plot.Rd
man/breast.Rd
man/calculate.maxK.Rd
man/compute.stream.Rd
man/deltaplot.Rd
man/geo.mean.Rd
man/init.p.Rd
man/j0.multi.Rd
man/kendall.plot.Rd
man/kendall2Lists.Rd
man/kendallMLists.Rd
man/l2norm.Rd
man/mc.plot.Rd
man/mc.ranks.Rd
man/prepare.idata.Rd
man/spearman.Rd
man/trans.matrix.Rd
src
src/TopK.c
vignettes
vignettes/TopKInferenceFlowmap.pdf
vignettes/TopKLists.Rnw
vignettes/TopKListsGUI-1-Arguments.png
vignettes/TopKListsGUI-1-DeltaSlider.png
vignettes/TopKListsGUI-1.png
vignettes/TopKLists_workflow.pdf
vignettes/TopKSpaceSchema.pdf
vignettes/aggmap.png
vignettes/summarytable.png
vignettes/venndiagram.png
TopKLists documentation built on May 21, 2017, 12:21 a.m.