TopKLists: Inference, Aggregation and Visualization for Top-K Ranked Lists

For multiple ranked input lists (full or partial) representing the same set of N objects, the package TopKLists offers (1) statistical inference on the lengths of informative top-k lists, (2) stochastic aggregation of full or partial lists, and (3) graphical tools for the statistical exploration of input lists, and for the visualization of aggregation results.

Author
Michael G. Schimek, Eva Budinska, Jie Ding, Karl G. Kugler, Vendula Svendova, Shili Lin
Date of publication
2015-11-09 14:41:55
Maintainer
Michael G. Schimek <michael.schimek@medunigraz.at>
License
LGPL-3
Version
1.0.6
URLs

View on R-Forge

Man pages

aggmap
Aggregation map for the integration of truncated lists
borda
Borda based rank aggregation
borda.plot
Plot Borda's scores against ranks
breast
Sample data from breast cancer expression
calculate.maxK
The main function for TopKInference
CEMC
CEMC based rank aggregation
compute.stream
Calculates point of degeneration j0 into noise of the Idata,...
deltaplot
An exploratory plot of discordance for delta selection.
geo.mean
Calculate the geometric mean
init.p
Initialization method for probabilities
j0.multi
Function returning an overall point j0 of degeneration into...
kendall2Lists
Calculate modified Kendall's tau distance
kendallMLists
KendallMLists
kendall.plot
Plot of the Kendall Criterion values
l2norm
Calculate the L2 norm
MC
Markov chain based rank aggregation
mc.plot
Plot of the ordered stationary probabilities
mc.ranks
MC based rank aggregation
prepare.idata
Prepare Idata vector of 0's and 1's
spearman
Modified Spearman's footrule distance
TopKListsGUI
TopKListsGUI for inference and visualization
TopKLists-package
Inference, aggregation and visualization for top-_k_ ranked...
TopKSample
Sampler to generate N top-k lists according to p
TopKSpaceSampleInput
Sample input for TopKSpace functions
trans.matrix
Compute transition matrices

Files in this package

TopKLists/DESCRIPTION
TopKLists/NAMESPACE
TopKLists/NEWS
TopKLists/R
TopKLists/R/TopKCEMC.R
TopKLists/R/TopKGraphics.R
TopKLists/R/TopKInference.R
TopKLists/R/TopKSpace.R
TopKLists/build
TopKLists/build/vignette.rds
TopKLists/data
TopKLists/data/TopKSpaceSampleInput.rda
TopKLists/data/breast.rda
TopKLists/data/datalist
TopKLists/inst
TopKLists/inst/CITATION
TopKLists/inst/doc
TopKLists/inst/doc/TopKLists.Rnw
TopKLists/inst/doc/TopKLists.pdf
TopKLists/man
TopKLists/man/CEMC.Rd
TopKLists/man/MC.Rd
TopKLists/man/TopKLists-package.Rd
TopKLists/man/TopKListsGUI.Rd
TopKLists/man/TopKSample.Rd
TopKLists/man/TopKSpaceSampleInput.Rd
TopKLists/man/aggmap.Rd
TopKLists/man/borda.Rd
TopKLists/man/borda.plot.Rd
TopKLists/man/breast.Rd
TopKLists/man/calculate.maxK.Rd
TopKLists/man/compute.stream.Rd
TopKLists/man/deltaplot.Rd
TopKLists/man/geo.mean.Rd
TopKLists/man/init.p.Rd
TopKLists/man/j0.multi.Rd
TopKLists/man/kendall.plot.Rd
TopKLists/man/kendall2Lists.Rd
TopKLists/man/kendallMLists.Rd
TopKLists/man/l2norm.Rd
TopKLists/man/mc.plot.Rd
TopKLists/man/mc.ranks.Rd
TopKLists/man/prepare.idata.Rd
TopKLists/man/spearman.Rd
TopKLists/man/trans.matrix.Rd
TopKLists/src
TopKLists/src/TopK.c
TopKLists/vignettes
TopKLists/vignettes/TopKInferenceFlowmap.pdf
TopKLists/vignettes/TopKLists.Rnw
TopKLists/vignettes/TopKListsGUI-1-Arguments.png
TopKLists/vignettes/TopKListsGUI-1-DeltaSlider.png
TopKLists/vignettes/TopKListsGUI-1.png
TopKLists/vignettes/TopKLists_workflow.pdf
TopKLists/vignettes/TopKSpaceSchema.pdf
TopKLists/vignettes/aggmap.png
TopKLists/vignettes/summarytable.png
TopKLists/vignettes/venndiagram.png