Umpire: Umpire Package
Version 1.3.0

The Ultimate Microrray Prediction, Reality and Inference Engine (UMPIRE) is a package to facilitate the simulation of realistic microarray dataset.

AuthorKevin R. Coombes, Jiexin Zhang
Date of publication2015-05-26 18:32:53
MaintainerKevin R. Coombes <krc@silicovore.com>
LicenseApache License (== 2.0)
Version1.3.0
URL http://oompa.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Umpire", repos="http://R-Forge.R-project.org")

Popular man pages

e08-transforms: Transform functions
e09-NoiseModel-class: The "NoiseModel" Class
e13-CancerModel-class: The "CancerModel" Class
e16-normalVcancer: Simulating Cancer Versus Normal Datasets
e20-alterMean-method: Methods "alterMean" and "alterSD"
e21-blur-method: Method "blur"
e22-rand-method: Method "rand"
See all...

All man pages Function index File listing

Man pages

e00-Umpire-package: UMPIRE: Ultimate Microarray Prediction, Inference, and...
e01-Engine-class: The "Engine" Class
e02-EngineWithActivity-class: The "EngineWithActivity" Class
e03-IndependentNormal-class: The "IndependentNormal" Class
e04-IndependentLogNormal-class: The "IndependentLogNormal" Class
e05-MVN-class: The "MVN" Class
e08-transforms: Transform functions
e09-NoiseModel-class: The "NoiseModel" Class
e11-SurvivalModel-class: The "SurvivalModel" Class
e13-CancerModel-class: The "CancerModel" Class
e14-CancerEngine-class: The "CancerEngine" Class
e15-BlockHyperParameters-class: The "BlockHyperParameters" Class
e16-normalVcancer: Simulating Cancer Versus Normal Datasets
e20-alterMean-method: Methods "alterMean" and "alterSD"
e21-blur-method: Method "blur"
e22-rand-method: Method "rand"

Functions

Files

DESCRIPTION
NAMESPACE
R
R/AllGenerics.R
R/e00-engine.R
R/e01-indNormal.R
R/e02-indLogNorm.R
R/e03-mvn.R
R/e04-hit.R
R/e05-noise.R
R/e06-engineAct.R
R/e07-1-survModel.R
R/e07-2-cancerModel.R
R/e08-cancerEngine.R
R/e09-extra.R
R/e10-normalVcancer.R
TODO
build
build/vignette.rds
inst
inst/doc
inst/doc/Umpire.R
inst/doc/Umpire.Rnw
inst/doc/Umpire.pdf
man
man/e00-Umpire-package.Rd
man/e01-Engine-class.Rd
man/e02-EngineWithActivity-class.Rd
man/e03-IndependentNormal-class.Rd
man/e04-IndependentLogNormal-class.Rd
man/e05-MVN-class.Rd
man/e08-transforms.Rd
man/e09-NoiseModel-class.Rd
man/e11-SurvivalModel-class.Rd
man/e13-CancerModel-class.Rd
man/e14-CancerEngine-class.Rd
man/e15-BlockHyperParameters-class.Rd
man/e16-normalVcancer.Rd
man/e20-alterMean-method.Rd
man/e21-blur-method.Rd
man/e22-rand-method.Rd
tests
tests/t01-indNormal.R
tests/t02-1-engine.R
tests/t02-indLogNorm.R
tests/t03-mvn.R
tests/t05-noise.R
tests/t06-engineAct.R
tests/t07-cancerModel.R
tests/t08-cancerEngine.R
vignettes
vignettes/Umpire.Rnw
Umpire documentation built on May 21, 2017, 4:02 a.m.

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