Umpire: Umpire Package

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The Ultimate Microrray Prediction, Reality and Inference Engine (UMPIRE) is a package to facilitate the simulation of realistic microarray dataset.

Author
Kevin R. Coombes, Jiexin Zhang
Date of publication
2015-05-26 18:32:53
Maintainer
Kevin R. Coombes <krc@silicovore.com>
License
Apache License (== 2.0)
Version
1.3.0
URLs

View on R-Forge

Man pages

e00-Umpire-package
UMPIRE: Ultimate Microarray Prediction, Inference, and...
e01-Engine-class
The "Engine" Class
e02-EngineWithActivity-class
The "EngineWithActivity" Class
e03-IndependentNormal-class
The "IndependentNormal" Class
e04-IndependentLogNormal-class
The "IndependentLogNormal" Class
e05-MVN-class
The "MVN" Class
e08-transforms
Transform functions
e09-NoiseModel-class
The "NoiseModel" Class
e11-SurvivalModel-class
The "SurvivalModel" Class
e13-CancerModel-class
The "CancerModel" Class
e14-CancerEngine-class
The "CancerEngine" Class
e15-BlockHyperParameters-class
The "BlockHyperParameters" Class
e16-normalVcancer
Simulating Cancer Versus Normal Datasets
e20-alterMean-method
Methods "alterMean" and "alterSD"
e21-blur-method
Method "blur"
e22-rand-method
Method "rand"

Files in this package

Umpire/DESCRIPTION
Umpire/NAMESPACE
Umpire/R
Umpire/R/AllGenerics.R
Umpire/R/e00-engine.R
Umpire/R/e01-indNormal.R
Umpire/R/e02-indLogNorm.R
Umpire/R/e03-mvn.R
Umpire/R/e04-hit.R
Umpire/R/e05-noise.R
Umpire/R/e06-engineAct.R
Umpire/R/e07-1-survModel.R
Umpire/R/e07-2-cancerModel.R
Umpire/R/e08-cancerEngine.R
Umpire/R/e09-extra.R
Umpire/R/e10-normalVcancer.R
Umpire/TODO
Umpire/build
Umpire/build/vignette.rds
Umpire/inst
Umpire/inst/doc
Umpire/inst/doc/Umpire.R
Umpire/inst/doc/Umpire.Rnw
Umpire/inst/doc/Umpire.pdf
Umpire/man
Umpire/man/e00-Umpire-package.Rd
Umpire/man/e01-Engine-class.Rd
Umpire/man/e02-EngineWithActivity-class.Rd
Umpire/man/e03-IndependentNormal-class.Rd
Umpire/man/e04-IndependentLogNormal-class.Rd
Umpire/man/e05-MVN-class.Rd
Umpire/man/e08-transforms.Rd
Umpire/man/e09-NoiseModel-class.Rd
Umpire/man/e11-SurvivalModel-class.Rd
Umpire/man/e13-CancerModel-class.Rd
Umpire/man/e14-CancerEngine-class.Rd
Umpire/man/e15-BlockHyperParameters-class.Rd
Umpire/man/e16-normalVcancer.Rd
Umpire/man/e20-alterMean-method.Rd
Umpire/man/e21-blur-method.Rd
Umpire/man/e22-rand-method.Rd
Umpire/tests
Umpire/tests/t01-indNormal.R
Umpire/tests/t02-1-engine.R
Umpire/tests/t02-indLogNorm.R
Umpire/tests/t03-mvn.R
Umpire/tests/t05-noise.R
Umpire/tests/t06-engineAct.R
Umpire/tests/t07-cancerModel.R
Umpire/tests/t08-cancerEngine.R
Umpire/vignettes
Umpire/vignettes/Umpire.Rnw