API for Umpire
Simulating Realistic Gene Expression and Clinical Data
| Global functions | |
|---|---|
| .realizeOutcome | Source code |
| .realizeSurvival | Source code |
| BlockHyperParameters | Man page Source code |
| BlockHyperParameters-class | Man page |
| CancerEngine | Man page Source code |
| CancerEngine-class | Man page |
| CancerModel | Man page Source code |
| CancerModel-class | Man page |
| ClinicalBHP | Source code |
| ClinicalEngine | Man page Source code |
| ClinicalNoiseModel | Man page Source code |
| Engine | Man page Source code |
| Engine-class | Man page |
| EngineWithActivity | Man page Source code |
| EngineWithActivity-class | Man page |
| IndependentLogNormal | Man page Source code |
| IndependentLogNormal-class | Man page |
| IndependentNormal | Man page Source code |
| IndependentNormal-class | Man page |
| MVN | Man page Source code |
| MVN-class | Man page |
| MixedTypeEngine | Man page |
| MixedTypeEngine-class | Man page |
| NoiseModel | Man page Source code |
| NoiseModel-class | Man page |
| NormalVsCancerEngine | Man page Source code |
| NormalVsCancerModel | Man page Source code |
| Prevalence | Source code |
| SurvivalModel | Man page Source code |
| SurvivalModel-class | Man page |
| addControl | Man page |
| addControl,ANY-method | Man page |
| addControl,CancerEngine-method | Man page |
| addControl,CancerModel-method | Man page |
| addControl-method | Man page |
| alterMean | Man page |
| alterMean,ANY-method | Man page |
| alterMean,Engine-method | Man page |
| alterMean,IndependentLogNormal-method | Man page |
| alterMean,IndependentNormal-method | Man page |
| alterMean,MVN-method | Man page |
| alterMean-method | Man page |
| alterSD | Man page |
| alterSD,ANY-method | Man page |
| alterSD,Engine-method | Man page |
| alterSD,IndependentLogNormal-method | Man page |
| alterSD,IndependentNormal-method | Man page |
| alterSD,MVN-method | Man page |
| alterSD-method | Man page |
| blur | Man page |
| blur,ANY-method | Man page |
| blur,NoiseModel-method | Man page |
| blur-method | Man page |
| computeBlocks | Source code |
| correl | Man page Source code |
| covar | Man page Source code |
| getDaisyTypes | Man page Source code |
| getDataTypes | Man page Source code |
| invGammaMultiple | Man page Source code |
| makeBinary | Source code |
| makeBlockStructure | Man page Source code |
| makeCategories | Source code |
| makeDataTypes | Man page Source code |
| nComponents | Man page |
| nComponents,ANY-method | Man page |
| nComponents,CancerEngine-method | Man page |
| nComponents,Engine-method | Man page |
| nComponents-method | Man page |
| nHitsPerPattern | Man page Source code |
| nPatterns | Man page Source code |
| nPossibleHits | Man page Source code |
| ncol,CancerModel-method | Man page |
| normalOffset | Man page Source code |
| nrow,CancerEngine-method | Man page |
| nrow,CancerModel-method | Man page |
| nrow,Engine-method | Man page |
| nrow,IndependentLogNormal-method | Man page |
| nrow,IndependentNormal-method | Man page |
| nrow,MVN-method | Man page |
| outcomeCoefficients | Man page Source code |
| rand | Man page |
| rand,ANY-method | Man page |
| rand,CancerEngine-method | Man page |
| rand,CancerModel-method | Man page |
| rand,Engine-method | Man page |
| rand,EngineWithActivity-method | Man page |
| rand,IndependentLogNormal-method | Man page |
| rand,IndependentNormal-method | Man page |
| rand,MVN-method | Man page |
| rand,MixedTypeEngine-method | Man page |
| rand,SurvivalModel-method | Man page |
| rand-method | Man page |
| summary,CancerEngine-method | Man page |
| summary,CancerModel-method | Man page |
| summary,Engine-method | Man page |
| summary,EngineWithActivity-method | Man page |
| summary,IndependentLogNormal-method | Man page |
| summary,IndependentNormal-method | Man page |
| summary,MVN-method | Man page |
| summary,MixedTypeEngine-method | Man page |
| summary,NoiseModel-method | Man page |
| survivalCoefficients | Man page Source code |
