abd: The Analysis of Biological Data

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The abd package contains data sets and sample code for The Analysis of Biological Data by Michael Whitlock and Dolph Schluter (2009; Roberts & Company Publishers).

Author
Kevin M. Middleton <kmm@csusb.edu>, Randall Pruim <rpruim@calvin.edu>
Date of publication
2011-10-21 18:31:45
Maintainer
Kevin M. Middleton <kmm@csusb.edu>
License
GPL-2
Version
0.1-23

View on R-Forge

Man pages

abdData
Find data in _Analysis of Biological Data_
abd-package
Data sets from The Analysis of Biological Data
AlgaeCO2
Carbon Dioxide and Growth Rate in Algae
Antilles
Antilles Bird Immigration Dates
Aspirin
Effects of Aspirin on Cancer Rates
as.xtabs
Convert objects to xtabs format
BeeGenes
Foraging Gene Expression
BeeLifespans
Bee Lifespans
Beetles
Beetle Wings and Horns
BirdSexRatio
Sex Ratios in Birds
Blackbirds
Testosterone Levels in Blackbirds
BodyFatHeatLoss
Heat Loss and Body Fat
BrainExpression
Proteolipid Protein 1 Gene Expression
BrookTrout
Salmon Survival in the Presence of Brook Trout
Cavalry
Deaths from Horse Kicks
Chickadees
Alarm Calls in Chickadees
ChimpBrains
Brodmann's Area 44 in Chimps
Cichlids
Cichlid Mating Preference
CichlidsGnRH
GnRH Levels in Cichlids
Clearcuts
Biomass Change in Rainforests near Clearcuts
CocaineDopamine
Effects of Cocaine on Dopamine Receptors
col.abd
Lattice theme for Analysis of Biological Data
Convictions
Frequency of Convictions for a Cohort of English Boys
ConvictionsAndIncome
Convictions and Income Level in a Cohort of English Boys
Crickets
Immunity and Sperm Viability in Crickets
cumfreq
Cumulative frequency plots
cv
Coefficient of Variation
DaphniaLongevity
Daphnia Longevity
DaphniaResistance
Daphnia Resistance to Cyanobacteria
dataInfo
'abd' Data Sets
DayOfBirth
Day of Birth
DEET
DEET and Mosquito Bites
DesertBirds
Desert Bird Census Data
Dioecy
Dioecy vs. Monomorphism in Plants
Dolphins
Dolphin Swimming Behavior
DungBeetles
Heritability of Body Condition in Dung Beetles
Earthworms
Earthworm Diversity and Soil Nitrogen Levels
Earwigs
Earwig Density and Forceps
Eelgrass
Eelgrass Genotypes
ElectricFish
Electric Fish
ElVerde
Diet Breadth in a Rainforest Community
EndangeredSpecies
Endangered and Threatened Species
expand.dft
Expand a data.frame
favstats
Some favorite statistical summaries
FingerRatio
2D:4D Finger Ratio
Fireflies
Spermatophore Mass in Fireflies
FireflyFlash
Firefly Flash Duration
FlycatcherPatch
Forehead Patch Size in Collared Flycatachers
FlyTestes
Testes Size in Flies
GeneRegulation
Gene Regulation in Saccharomyces
GlidingSnakes
GlidingSnakes
GodwitArrival
Godwit Arrival Dates
Grassland
Grassland Diversity
GreatTitMalaria
Malaria in Populations of Great Tit
Greenspace
Diversity in Urban Green Space
Guppies
Ornamentation and Attractiveness in Guppies
Hemoglobin
Hemoglobin Levels in High Altitude Populations
HippocampusLesions
Memory and the Hippocampus
histochart
Histogram from tabulated data
HornedLizards
Horn Length and Predation Status of Horned Lizards
HumanBodyTemp
Human Body Temperature
HumanGeneLengths
Human Gene Lengths
Hurricanes
Intense Hurricanes
Iguanas
Iguana Body Length Changes
IntertidalAlgae
Intertidal Algae
interval
Confidence Interval
JetLagKnees
Circadian Rhythm Phase Shift
KenyaFinches
Body Mass and Beak Length in Three Species of Finches in...
LanguageBrains
Brain Structure in Bilingual Humans
LarvalFish
Exploited Larval Fish
Lefthanded
Left-handedness and Rates of Violence
LionCubs
Time to Reproduction in Female Lions
LionNoses
Lion Age and Nose Coloration
LiverPreparation
Liver Preparation
LizardBite
Bite Force in Collard Lizards
LizardSprint
Sprint Speeds in Canyon Lizards
Lobsters
Lobster Orientation
LodgepolePines
Lodgepole Pine Cone Masses
LupusMice
Autoimmune Reactivity in Lupus-prone Mice
Lynx
Population Cycles of Lynx in Canada 1752-1819
MarineReserve
Marine Reserve Biomass
MassExtinctions
Mass Extinction Frequency
meanCI
Confidence Intervals and P-values for a Mean
MoleRats
Energy Expenditure in Mole Rats
Mosquitoes
Body Size in Anopheles Mosquitoes
MouseEmpathy
Mouse Empathy
NeanderthalBrains
Cranial Capacity in Neanderthals and Modern Humans
NematodeLifespan
Effects of Trimethadione on Lifespan in Nematodes
NeotropicalTrees
Photosynthesis in Neotropical Trees
Newts
Tetrodotoxin Resistance in Garter Snakes
NorthSeaCod
Atlantic Cod Recruits
NoSmokingDay
No Smoking Day
odds.ratio
Odds Ratio for 2X2 Contingency Tables
OstrichTemp
Ostrich Body and Brain Temperatures
Penguins
Penguin Heart Rate
PlantPersistence
Population Persistence Times
Pollen
Sterility in Hybrid Pollens
Powerball
Powerball Tickets Sold
PrimateMetabolism
Primate Metabolic Rates
PrimateWBC
Primate White Blood Cell Counts and Promiscuity
ProgesteroneExercise
Progesterone and Exercise
Pseudoscorpions
Multiple Mating in Pseudoscorpions
Pufferfish
Pufferfish Mimicry
Rattlesnakes
Temperature Change and Meal Size in Rattlesnakes
Rigormortis
Rigormortis and Time of Death
RopeTrick
Indian Rope Trick
SagebrushCrickets
Sagebrush Cricket Mating Times
SalmonColor
Pacific Salmon Color
sample
Random Samples and Permutations
se
Standard Error of the Mean
Seedlings
Number of Seedlings Per Quadrat
Selection
Data for Meta-analysis
SexualSelection
Sexual Conflict
ShadParasites
Shad Parasites
ShrinkingSeals
Seal Body Lengths and Age
ShuttleDisaster
Ambient Temperature and O-Ring Failures
Silversword
Rate of Speciation in Silverswords
SleepAndPerformance
Sleep and Learning
SockeyeFemales
Body Masses of Female Sockeye Salmon
Sparrows
Lifetime Reproductive Success in House Sparrows
SpiderColonies
Social Spiders
SpiderSpeed
Spider Running Speeds after Amputation
Stalkies1
Eye Widths in Stalk-Eyed Flies
Stalkies2
Stalk-eyed Fly Eyespan
SticklebackPlates
Number of Lateral Plates in Sticklebacks
SticklebackPreference
Mating Preferences in Sticklebacks
Sumo
Sumo Wrestling Wins
sum_of_squares
Sum of Squares and Sum of Products
SyrupSwimming
Syrup Swimming
TeenDeaths
Causes of Teenage Deaths
Telomeres
Telomere Shortening
TimeOfDeath
Hypoxanthine and Time Since Death
Toads
Right-handed Toads
Tobacco
Flower Length in Tobacco Plants
Tobacco2
Flower Length in Tobacco Plants
ToothAge
Radioactive Teeth
TreeSeedlings
Tree Seedlings and Sunflecks
Trematodes
Frequencies of Fish Eaten by Trematode Infection Level
Trillium
Trillium Recruitment near Clearcuts
Truffles
Truffle Distribution
TsetseLearning
Dietary Learning in Tsetse Flies
TwoKids
Number of Boys in Two-Child Families
VampireBites
Vampire Bat Bites
VasopressinVoles
Vasopressin Manipulation in the Meadow Vole
Vines
Climbing Vines
VoleDispersal
Home Range Size in Field Voles
WalkingStickFemurs
Walking Stick Femur Length
WalkingStickHeads
Walking Stick Head Width
WeddellSeals
Energetic Cost of Diving
WillsDebates
Presidential "Wills"
WillsPresidents
Presidential "Wills"
wilsonCI
Wilson (Agresti-Coull) CI for a Binomial Proportion
WolfTeeth
Wolf Tooth Measurements
Wolves
Inbreeding in Wolves
WorldCup
World Cup Goals
WrasseSexes
Distribution of Wrasses
YeastGenes
Yeast Regulatory Genes
ZebraFinchBeaks
Mate Preference in Zebra Finches
ZebraFinches
Zebra Finch Carotenoids
ZooMortality
Home Range Size and Mortality
Zooplankton
Zooplankton Depredation

Files in this package

abd/DESCRIPTION
abd/NAMESPACE
abd/R
abd/R/abdData.R
abd/R/as.xtabs.R
abd/R/col.abd.R
abd/R/cumfreq.R
abd/R/cv.R
abd/R/expand.dft.R
abd/R/favstats.R
abd/R/histochart.R
abd/R/interval.R
abd/R/meanCI.R
abd/R/meanPval.R
abd/R/odds.ratio.R
abd/R/propCI.R
abd/R/propPval.R
abd/R/pval.R
abd/R/sample.R
abd/R/se.R
abd/R/sum_of_products.R
abd/R/wilsonCI.R
abd/TODO
abd/abd-Ex.R
abd/data
abd/data/AlgaeCO2.rda
abd/data/Antilles.rda
abd/data/Aspirin.rda
abd/data/BeeGenes.rda
abd/data/BeeLifespans.rda
abd/data/Beetles.rda
abd/data/BirdSexRatio.rda
abd/data/Blackbirds.rda
abd/data/BodyFatHeatLoss.rda
abd/data/BrainExpression.rda
abd/data/BrookTrout.rda
abd/data/BrookTrout2.rda
abd/data/Cavalry.rda
abd/data/Chickadees.rda
abd/data/ChimpBrains.rda
abd/data/Cichlids.rda
abd/data/CichlidsGnRH.rda
abd/data/Clearcuts.rda
abd/data/CocaineDopamine.rda
abd/data/Convictions.rda
abd/data/ConvictionsAndIncome.rda
abd/data/Crickets.rda
abd/data/DEET.rda
abd/data/DaphniaLongevity.rda
abd/data/DaphniaResistance.rda
abd/data/DayOfBirth.rda
abd/data/DesertBirds.rda
abd/data/Dioecy.rda
abd/data/Dolphins.rda
abd/data/DungBeetles.rda
abd/data/Earthworms.rda
abd/data/Earwigs.rda
abd/data/Eelgrass.rda
abd/data/ElVerde.rda
abd/data/ElectricFish.rda
abd/data/EndangeredSpecies.rda
abd/data/FingerRatio.rda
abd/data/Fireflies.rda
abd/data/FireflyFlash.rda
abd/data/FlyTestes.rda
abd/data/FlycatcherPatch.rda
abd/data/GeneRegulation.rda
abd/data/GlidingSnakes.rda
abd/data/GodwitArrival.rda
abd/data/Grassland.rda
abd/data/GreatTitMalaria.rda
abd/data/Greenspace.rda
abd/data/Guppies.rda
abd/data/Hemoglobin.rda
abd/data/HippocampusLesions.rda
abd/data/HornedLizards.rda
abd/data/HumanBodyTemp.rda
abd/data/HumanGeneLengths.rda
abd/data/Hurricanes.rda
abd/data/Iguanas.rda
abd/data/IntertidalAlgae.rda
abd/data/JetLagKnees.rda
abd/data/KenyaFinches.rda
abd/data/LanguageBrains.rda
abd/data/LarvalFish.rda
abd/data/Lefthanded.rda
abd/data/LionCubs.rda
abd/data/LionNoses.rda
abd/data/LiverPreparation.rda
abd/data/LizardBite.rda
abd/data/LizardSprint.rda
abd/data/Lobsters.rda
abd/data/LodgepolePines.rda
abd/data/LupusMice.rda
abd/data/Lynx.rda
abd/data/MarineReserve.rda
abd/data/MassExtinctions.rda
abd/data/MoleRats.rda
abd/data/Mosquitoes.rda
abd/data/MouseEmpathy.rda
abd/data/NeanderthalBrains.rda
abd/data/NematodeLifespan.rda
abd/data/NeotropicalTrees.rda
abd/data/Newts.rda
abd/data/NoSmokingDay.rda
abd/data/NorthSeaCod.rda
abd/data/OstrichTemp.rda
abd/data/Penguins.rda
abd/data/PlantPersistence.rda
abd/data/Pollen.rda
abd/data/Powerball.rda
abd/data/PrimateMetabolism.rda
abd/data/PrimateWBC.rda
abd/data/ProgesteroneExercise.rda
abd/data/Pseudoscorpions.rda
abd/data/Pufferfish.rda
abd/data/Rattlesnakes.rda
abd/data/Rigormortis.rda
abd/data/RopeTrick.rda
abd/data/SagebrushCrickets.rda
abd/data/SalmonColor.rda
abd/data/Seedlings.rda
abd/data/Selection.rda
abd/data/SexualSelection.rda
abd/data/ShadParasites.rda
abd/data/ShrinkingSeals.rda
abd/data/ShuttleDisaster.rda
abd/data/Silversword.rda
abd/data/SleepAndPerformance.rda
abd/data/SockeyeFemales.rda
abd/data/Sparrows.rda
abd/data/SpiderColonies.rda
abd/data/SpiderSpeed.rda
abd/data/Stalkies1.rda
abd/data/Stalkies2.rda
abd/data/SticklebackPlates.rda
abd/data/SticklebackPreference.rda
abd/data/Sumo.rda
abd/data/SyrupSwimming.rda
abd/data/TeenDeaths.rda
abd/data/Telomeres.rda
abd/data/TimeOfDeath.rda
abd/data/Toads.rda
abd/data/Tobacco.rda
abd/data/Tobacco2.rda
abd/data/ToothAge.rda
abd/data/TreeSeedlings.rda
abd/data/Trematodes.rda
abd/data/Trillium.rda
abd/data/Truffles.rda
abd/data/TsetseLearning.rda
abd/data/TwoKids.rda
abd/data/VampireBites.rda
abd/data/VasopressinVoles.rda
abd/data/Vines.rda
abd/data/VoleDispersal.rda
abd/data/WalkingStickFemurs.rda
abd/data/WalkingStickHeads.rda
abd/data/WeddellSeals.rda
abd/data/WillsDebates.rda
abd/data/WillsPresidents.rda
abd/data/WolfTeeth.rda
abd/data/Wolves.rda
abd/data/WorldCup.rda
abd/data/WrasseSexes.rda
abd/data/YeastGenes.rda
abd/data/ZebraFinchBeaks.rda
abd/data/ZebraFinches.rda
abd/data/ZooMortality.rda
abd/data/Zooplankton.rda
abd/data/dataInfo.rda
abd/demo
abd/demo/00Index
abd/demo/examples.R
abd/demo/sec17.8.R
abd/demo/sec2.1.R
abd/demo/sec2.2.R
abd/demo/sec2.3.R
abd/demo/sec2.4.R
abd/demo/sec2.5.R
abd/demo/sec3.1.R
abd/demo/sec3.2.R
abd/demo/sec3.3.R
abd/demo/sec3.4.R
abd/demo/sec4.1.R
abd/demo/sec6.2.R
abd/demo/sec6.4.R
abd/demo/sec6.5.R
abd/demo/sec7.1.R
abd/demo/sec7.2.R
abd/demo/sec9.2.R
abd/demo/sec9.3.R
abd/demo/sec9.4.R
abd/demo/sec9.5.R
abd/inst
abd/inst/NEWS
abd/inst/README
abd/inst/THANKS
abd/man
abd/man/AlgaeCO2.Rd
abd/man/Antilles.Rd
abd/man/Aspirin.Rd
abd/man/BeeGenes.Rd
abd/man/BeeLifespans.Rd
abd/man/Beetles.Rd
abd/man/BirdSexRatio.Rd
abd/man/Blackbirds.Rd
abd/man/BodyFatHeatLoss.Rd
abd/man/BrainExpression.Rd
abd/man/BrookTrout.Rd
abd/man/Cavalry.Rd
abd/man/Chickadees.Rd
abd/man/ChimpBrains.Rd
abd/man/Cichlids.Rd
abd/man/CichlidsGnRH.Rd
abd/man/Clearcuts.Rd
abd/man/CocaineDopamine.Rd
abd/man/Convictions.Rd
abd/man/ConvictionsAndIncome.Rd
abd/man/Crickets.Rd
abd/man/DEET.Rd
abd/man/DaphniaLongevity.Rd
abd/man/DaphniaResistance.Rd
abd/man/DayOfBirth.Rd
abd/man/DesertBirds.Rd
abd/man/Dioecy.Rd
abd/man/Dolphins.Rd
abd/man/DungBeetles.Rd
abd/man/Earthworms.Rd
abd/man/Earwigs.Rd
abd/man/Eelgrass.Rd
abd/man/ElVerde.Rd
abd/man/ElectricFish.Rd
abd/man/EndangeredSpecies.Rd
abd/man/FingerRatio.Rd
abd/man/Fireflies.Rd
abd/man/FireflyFlash.Rd
abd/man/FlyTestes.Rd
abd/man/FlycatcherPatch.Rd
abd/man/GeneRegulation.Rd
abd/man/GlidingSnakes.Rd
abd/man/GodwitArrival.Rd
abd/man/Grassland.Rd
abd/man/GreatTitMalaria.Rd
abd/man/Greenspace.Rd
abd/man/Guppies.Rd
abd/man/Hemoglobin.Rd
abd/man/HippocampusLesions.Rd
abd/man/HornedLizards.Rd
abd/man/HumanBodyTemp.Rd
abd/man/HumanGeneLengths.Rd
abd/man/Hurricanes.Rd
abd/man/Iguanas.Rd
abd/man/IntertidalAlgae.Rd
abd/man/JetLagKnees.Rd
abd/man/KenyaFinches.Rd
abd/man/LanguageBrains.Rd
abd/man/LarvalFish.Rd
abd/man/Lefthanded.Rd
abd/man/LionCubs.Rd
abd/man/LionNoses.Rd
abd/man/LiverPreparation.Rd
abd/man/LizardBite.Rd
abd/man/LizardSprint.Rd
abd/man/Lobsters.Rd
abd/man/LodgepolePines.Rd
abd/man/LupusMice.Rd
abd/man/Lynx.Rd
abd/man/MarineReserve.Rd
abd/man/MassExtinctions.Rd
abd/man/MoleRats.Rd
abd/man/Mosquitoes.Rd
abd/man/MouseEmpathy.Rd
abd/man/NeanderthalBrains.Rd
abd/man/NematodeLifespan.Rd
abd/man/NeotropicalTrees.Rd
abd/man/Newts.Rd
abd/man/NoSmokingDay.Rd
abd/man/NorthSeaCod.Rd
abd/man/OstrichTemp.Rd
abd/man/Penguins.Rd
abd/man/PlantPersistence.Rd
abd/man/Pollen.Rd
abd/man/Powerball.Rd
abd/man/PrimateMetabolism.Rd
abd/man/PrimateWBC.Rd
abd/man/ProgesteroneExercise.Rd
abd/man/Pseudoscorpions.Rd
abd/man/Pufferfish.Rd
abd/man/Rattlesnakes.Rd
abd/man/Rigormortis.Rd
abd/man/RopeTrick.Rd
abd/man/SagebrushCrickets.Rd
abd/man/SalmonColor.Rd
abd/man/Seedlings.Rd
abd/man/Selection.Rd
abd/man/SexualSelection.Rd
abd/man/ShadParasites.Rd
abd/man/ShrinkingSeals.Rd
abd/man/ShuttleDisaster.Rd
abd/man/Silversword.Rd
abd/man/SleepAndPerformance.Rd
abd/man/SockeyeFemales.Rd
abd/man/Sparrows.Rd
abd/man/SpiderColonies.Rd
abd/man/SpiderSpeed.Rd
abd/man/Stalkies1.Rd
abd/man/Stalkies2.Rd
abd/man/SticklebackPlates.Rd
abd/man/SticklebackPreference.Rd
abd/man/Sumo.Rd
abd/man/SyrupSwimming.Rd
abd/man/TeenDeaths.Rd
abd/man/Telomeres.Rd
abd/man/TimeOfDeath.Rd
abd/man/Toads.Rd
abd/man/Tobacco.Rd
abd/man/Tobacco2.Rd
abd/man/ToothAge.Rd
abd/man/TreeSeedlings.Rd
abd/man/Trematodes.Rd
abd/man/Trillium.Rd
abd/man/Truffles.Rd
abd/man/TsetseLearning.Rd
abd/man/TwoKids.Rd
abd/man/VampireBites.Rd
abd/man/VasopressinVoles.Rd
abd/man/Vines.Rd
abd/man/VoleDispersal.Rd
abd/man/WalkingStickFemurs.Rd
abd/man/WalkingStickHeads.Rd
abd/man/WeddellSeals.Rd
abd/man/WillsDebates.Rd
abd/man/WillsPresidents.Rd
abd/man/WolfTeeth.Rd
abd/man/Wolves.Rd
abd/man/WorldCup.Rd
abd/man/WrasseSexes.Rd
abd/man/YeastGenes.Rd
abd/man/ZebraFinchBeaks.Rd
abd/man/ZebraFinches.Rd
abd/man/ZooMortality.Rd
abd/man/Zooplankton.Rd
abd/man/abd-package.Rd
abd/man/abdData.Rd
abd/man/as.xtabs.Rd
abd/man/col.abd.Rd
abd/man/cumfreq.Rd
abd/man/cv.Rd
abd/man/dataInfo.Rd
abd/man/expand.dft.Rd
abd/man/favstats.Rd
abd/man/histochart.Rd
abd/man/interval.Rd
abd/man/meanCI.Rd
abd/man/odds.ratio.Rd
abd/man/sample.Rd
abd/man/se.Rd
abd/man/sum_of_squares.Rd
abd/man/wilsonCI.Rd