abd: The Analysis of Biological Data

The abd package contains data sets and sample code for The Analysis of Biological Data by Michael Whitlock and Dolph Schluter (2009; Roberts & Company Publishers).

AuthorKevin M. Middleton <kmm@csusb.edu>, Randall Pruim <rpruim@calvin.edu>
Date of publication2011-10-21 18:31:45
MaintainerKevin M. Middleton <kmm@csusb.edu>
LicenseGPL-2
Version0.1-23

View on R-Forge

Man pages

abdData: Find data in _Analysis of Biological Data_

abd-package: Data sets from The Analysis of Biological Data

AlgaeCO2: Carbon Dioxide and Growth Rate in Algae

Antilles: Antilles Bird Immigration Dates

Aspirin: Effects of Aspirin on Cancer Rates

as.xtabs: Convert objects to xtabs format

BeeGenes: Foraging Gene Expression

BeeLifespans: Bee Lifespans

Beetles: Beetle Wings and Horns

BirdSexRatio: Sex Ratios in Birds

Blackbirds: Testosterone Levels in Blackbirds

BodyFatHeatLoss: Heat Loss and Body Fat

BrainExpression: Proteolipid Protein 1 Gene Expression

BrookTrout: Salmon Survival in the Presence of Brook Trout

Cavalry: Deaths from Horse Kicks

Chickadees: Alarm Calls in Chickadees

ChimpBrains: Brodmann's Area 44 in Chimps

Cichlids: Cichlid Mating Preference

CichlidsGnRH: GnRH Levels in Cichlids

Clearcuts: Biomass Change in Rainforests near Clearcuts

CocaineDopamine: Effects of Cocaine on Dopamine Receptors

col.abd: Lattice theme for Analysis of Biological Data

Convictions: Frequency of Convictions for a Cohort of English Boys

ConvictionsAndIncome: Convictions and Income Level in a Cohort of English Boys

Crickets: Immunity and Sperm Viability in Crickets

cumfreq: Cumulative frequency plots

cv: Coefficient of Variation

DaphniaLongevity: Daphnia Longevity

DaphniaResistance: Daphnia Resistance to Cyanobacteria

dataInfo: 'abd' Data Sets

DayOfBirth: Day of Birth

DEET: DEET and Mosquito Bites

DesertBirds: Desert Bird Census Data

Dioecy: Dioecy vs. Monomorphism in Plants

Dolphins: Dolphin Swimming Behavior

DungBeetles: Heritability of Body Condition in Dung Beetles

Earthworms: Earthworm Diversity and Soil Nitrogen Levels

Earwigs: Earwig Density and Forceps

Eelgrass: Eelgrass Genotypes

ElectricFish: Electric Fish

ElVerde: Diet Breadth in a Rainforest Community

EndangeredSpecies: Endangered and Threatened Species

expand.dft: Expand a data.frame

favstats: Some favorite statistical summaries

FingerRatio: 2D:4D Finger Ratio

Fireflies: Spermatophore Mass in Fireflies

FireflyFlash: Firefly Flash Duration

FlycatcherPatch: Forehead Patch Size in Collared Flycatachers

FlyTestes: Testes Size in Flies

GeneRegulation: Gene Regulation in Saccharomyces

GlidingSnakes: GlidingSnakes

GodwitArrival: Godwit Arrival Dates

Grassland: Grassland Diversity

GreatTitMalaria: Malaria in Populations of Great Tit

Greenspace: Diversity in Urban Green Space

Guppies: Ornamentation and Attractiveness in Guppies

Hemoglobin: Hemoglobin Levels in High Altitude Populations

HippocampusLesions: Memory and the Hippocampus

histochart: Histogram from tabulated data

HornedLizards: Horn Length and Predation Status of Horned Lizards

HumanBodyTemp: Human Body Temperature

HumanGeneLengths: Human Gene Lengths

Hurricanes: Intense Hurricanes

Iguanas: Iguana Body Length Changes

IntertidalAlgae: Intertidal Algae

interval: Confidence Interval

JetLagKnees: Circadian Rhythm Phase Shift

KenyaFinches: Body Mass and Beak Length in Three Species of Finches in...

LanguageBrains: Brain Structure in Bilingual Humans

LarvalFish: Exploited Larval Fish

Lefthanded: Left-handedness and Rates of Violence

LionCubs: Time to Reproduction in Female Lions

LionNoses: Lion Age and Nose Coloration

LiverPreparation: Liver Preparation

LizardBite: Bite Force in Collard Lizards

LizardSprint: Sprint Speeds in Canyon Lizards

Lobsters: Lobster Orientation

LodgepolePines: Lodgepole Pine Cone Masses

LupusMice: Autoimmune Reactivity in Lupus-prone Mice

Lynx: Population Cycles of Lynx in Canada 1752-1819

MarineReserve: Marine Reserve Biomass

MassExtinctions: Mass Extinction Frequency

meanCI: Confidence Intervals and P-values for a Mean

MoleRats: Energy Expenditure in Mole Rats

Mosquitoes: Body Size in Anopheles Mosquitoes

MouseEmpathy: Mouse Empathy

NeanderthalBrains: Cranial Capacity in Neanderthals and Modern Humans

NematodeLifespan: Effects of Trimethadione on Lifespan in Nematodes

NeotropicalTrees: Photosynthesis in Neotropical Trees

Newts: Tetrodotoxin Resistance in Garter Snakes

NorthSeaCod: Atlantic Cod Recruits

NoSmokingDay: No Smoking Day

odds.ratio: Odds Ratio for 2X2 Contingency Tables

OstrichTemp: Ostrich Body and Brain Temperatures

Penguins: Penguin Heart Rate

PlantPersistence: Population Persistence Times

Pollen: Sterility in Hybrid Pollens

Powerball: Powerball Tickets Sold

PrimateMetabolism: Primate Metabolic Rates

PrimateWBC: Primate White Blood Cell Counts and Promiscuity

ProgesteroneExercise: Progesterone and Exercise

Pseudoscorpions: Multiple Mating in Pseudoscorpions

Pufferfish: Pufferfish Mimicry

Rattlesnakes: Temperature Change and Meal Size in Rattlesnakes

Rigormortis: Rigormortis and Time of Death

RopeTrick: Indian Rope Trick

SagebrushCrickets: Sagebrush Cricket Mating Times

SalmonColor: Pacific Salmon Color

sample: Random Samples and Permutations

se: Standard Error of the Mean

Seedlings: Number of Seedlings Per Quadrat

Selection: Data for Meta-analysis

SexualSelection: Sexual Conflict

ShadParasites: Shad Parasites

ShrinkingSeals: Seal Body Lengths and Age

ShuttleDisaster: Ambient Temperature and O-Ring Failures

Silversword: Rate of Speciation in Silverswords

SleepAndPerformance: Sleep and Learning

SockeyeFemales: Body Masses of Female Sockeye Salmon

Sparrows: Lifetime Reproductive Success in House Sparrows

SpiderColonies: Social Spiders

SpiderSpeed: Spider Running Speeds after Amputation

Stalkies1: Eye Widths in Stalk-Eyed Flies

Stalkies2: Stalk-eyed Fly Eyespan

SticklebackPlates: Number of Lateral Plates in Sticklebacks

SticklebackPreference: Mating Preferences in Sticklebacks

Sumo: Sumo Wrestling Wins

sum_of_squares: Sum of Squares and Sum of Products

SyrupSwimming: Syrup Swimming

TeenDeaths: Causes of Teenage Deaths

Telomeres: Telomere Shortening

TimeOfDeath: Hypoxanthine and Time Since Death

Toads: Right-handed Toads

Tobacco: Flower Length in Tobacco Plants

Tobacco2: Flower Length in Tobacco Plants

ToothAge: Radioactive Teeth

TreeSeedlings: Tree Seedlings and Sunflecks

Trematodes: Frequencies of Fish Eaten by Trematode Infection Level

Trillium: Trillium Recruitment near Clearcuts

Truffles: Truffle Distribution

TsetseLearning: Dietary Learning in Tsetse Flies

TwoKids: Number of Boys in Two-Child Families

VampireBites: Vampire Bat Bites

VasopressinVoles: Vasopressin Manipulation in the Meadow Vole

Vines: Climbing Vines

VoleDispersal: Home Range Size in Field Voles

WalkingStickFemurs: Walking Stick Femur Length

WalkingStickHeads: Walking Stick Head Width

WeddellSeals: Energetic Cost of Diving

WillsDebates: Presidential "Wills"

WillsPresidents: Presidential "Wills"

wilsonCI: Wilson (Agresti-Coull) CI for a Binomial Proportion

WolfTeeth: Wolf Tooth Measurements

Wolves: Inbreeding in Wolves

WorldCup: World Cup Goals

WrasseSexes: Distribution of Wrasses

YeastGenes: Yeast Regulatory Genes

ZebraFinchBeaks: Mate Preference in Zebra Finches

ZebraFinches: Zebra Finch Carotenoids

ZooMortality: Home Range Size and Mortality

Zooplankton: Zooplankton Depredation

Files in this package

abd/DESCRIPTION
abd/NAMESPACE
abd/R
abd/R/abdData.R abd/R/as.xtabs.R abd/R/col.abd.R abd/R/cumfreq.R abd/R/cv.R abd/R/expand.dft.R abd/R/favstats.R abd/R/histochart.R abd/R/interval.R abd/R/meanCI.R abd/R/meanPval.R abd/R/odds.ratio.R abd/R/propCI.R abd/R/propPval.R abd/R/pval.R abd/R/sample.R abd/R/se.R abd/R/sum_of_products.R abd/R/wilsonCI.R
abd/TODO
abd/abd-Ex.R
abd/data
abd/data/AlgaeCO2.rda
abd/data/Antilles.rda
abd/data/Aspirin.rda
abd/data/BeeGenes.rda
abd/data/BeeLifespans.rda
abd/data/Beetles.rda
abd/data/BirdSexRatio.rda
abd/data/Blackbirds.rda
abd/data/BodyFatHeatLoss.rda
abd/data/BrainExpression.rda
abd/data/BrookTrout.rda
abd/data/BrookTrout2.rda
abd/data/Cavalry.rda
abd/data/Chickadees.rda
abd/data/ChimpBrains.rda
abd/data/Cichlids.rda
abd/data/CichlidsGnRH.rda
abd/data/Clearcuts.rda
abd/data/CocaineDopamine.rda
abd/data/Convictions.rda
abd/data/ConvictionsAndIncome.rda
abd/data/Crickets.rda
abd/data/DEET.rda
abd/data/DaphniaLongevity.rda
abd/data/DaphniaResistance.rda
abd/data/DayOfBirth.rda
abd/data/DesertBirds.rda
abd/data/Dioecy.rda
abd/data/Dolphins.rda
abd/data/DungBeetles.rda
abd/data/Earthworms.rda
abd/data/Earwigs.rda
abd/data/Eelgrass.rda
abd/data/ElVerde.rda
abd/data/ElectricFish.rda
abd/data/EndangeredSpecies.rda
abd/data/FingerRatio.rda
abd/data/Fireflies.rda
abd/data/FireflyFlash.rda
abd/data/FlyTestes.rda
abd/data/FlycatcherPatch.rda
abd/data/GeneRegulation.rda
abd/data/GlidingSnakes.rda
abd/data/GodwitArrival.rda
abd/data/Grassland.rda
abd/data/GreatTitMalaria.rda
abd/data/Greenspace.rda
abd/data/Guppies.rda
abd/data/Hemoglobin.rda
abd/data/HippocampusLesions.rda
abd/data/HornedLizards.rda
abd/data/HumanBodyTemp.rda
abd/data/HumanGeneLengths.rda
abd/data/Hurricanes.rda
abd/data/Iguanas.rda
abd/data/IntertidalAlgae.rda
abd/data/JetLagKnees.rda
abd/data/KenyaFinches.rda
abd/data/LanguageBrains.rda
abd/data/LarvalFish.rda
abd/data/Lefthanded.rda
abd/data/LionCubs.rda
abd/data/LionNoses.rda
abd/data/LiverPreparation.rda
abd/data/LizardBite.rda
abd/data/LizardSprint.rda
abd/data/Lobsters.rda
abd/data/LodgepolePines.rda
abd/data/LupusMice.rda
abd/data/Lynx.rda
abd/data/MarineReserve.rda
abd/data/MassExtinctions.rda
abd/data/MoleRats.rda
abd/data/Mosquitoes.rda
abd/data/MouseEmpathy.rda
abd/data/NeanderthalBrains.rda
abd/data/NematodeLifespan.rda
abd/data/NeotropicalTrees.rda
abd/data/Newts.rda
abd/data/NoSmokingDay.rda
abd/data/NorthSeaCod.rda
abd/data/OstrichTemp.rda
abd/data/Penguins.rda
abd/data/PlantPersistence.rda
abd/data/Pollen.rda
abd/data/Powerball.rda
abd/data/PrimateMetabolism.rda
abd/data/PrimateWBC.rda
abd/data/ProgesteroneExercise.rda
abd/data/Pseudoscorpions.rda
abd/data/Pufferfish.rda
abd/data/Rattlesnakes.rda
abd/data/Rigormortis.rda
abd/data/RopeTrick.rda
abd/data/SagebrushCrickets.rda
abd/data/SalmonColor.rda
abd/data/Seedlings.rda
abd/data/Selection.rda
abd/data/SexualSelection.rda
abd/data/ShadParasites.rda
abd/data/ShrinkingSeals.rda
abd/data/ShuttleDisaster.rda
abd/data/Silversword.rda
abd/data/SleepAndPerformance.rda
abd/data/SockeyeFemales.rda
abd/data/Sparrows.rda
abd/data/SpiderColonies.rda
abd/data/SpiderSpeed.rda
abd/data/Stalkies1.rda
abd/data/Stalkies2.rda
abd/data/SticklebackPlates.rda
abd/data/SticklebackPreference.rda
abd/data/Sumo.rda
abd/data/SyrupSwimming.rda
abd/data/TeenDeaths.rda
abd/data/Telomeres.rda
abd/data/TimeOfDeath.rda
abd/data/Toads.rda
abd/data/Tobacco.rda
abd/data/Tobacco2.rda
abd/data/ToothAge.rda
abd/data/TreeSeedlings.rda
abd/data/Trematodes.rda
abd/data/Trillium.rda
abd/data/Truffles.rda
abd/data/TsetseLearning.rda
abd/data/TwoKids.rda
abd/data/VampireBites.rda
abd/data/VasopressinVoles.rda
abd/data/Vines.rda
abd/data/VoleDispersal.rda
abd/data/WalkingStickFemurs.rda
abd/data/WalkingStickHeads.rda
abd/data/WeddellSeals.rda
abd/data/WillsDebates.rda
abd/data/WillsPresidents.rda
abd/data/WolfTeeth.rda
abd/data/Wolves.rda
abd/data/WorldCup.rda
abd/data/WrasseSexes.rda
abd/data/YeastGenes.rda
abd/data/ZebraFinchBeaks.rda
abd/data/ZebraFinches.rda
abd/data/ZooMortality.rda
abd/data/Zooplankton.rda
abd/data/dataInfo.rda
abd/demo
abd/demo/00Index
abd/demo/examples.R
abd/demo/sec17.8.R
abd/demo/sec2.1.R
abd/demo/sec2.2.R
abd/demo/sec2.3.R
abd/demo/sec2.4.R
abd/demo/sec2.5.R
abd/demo/sec3.1.R
abd/demo/sec3.2.R
abd/demo/sec3.3.R
abd/demo/sec3.4.R
abd/demo/sec4.1.R
abd/demo/sec6.2.R
abd/demo/sec6.4.R
abd/demo/sec6.5.R
abd/demo/sec7.1.R
abd/demo/sec7.2.R
abd/demo/sec9.2.R
abd/demo/sec9.3.R
abd/demo/sec9.4.R
abd/demo/sec9.5.R
abd/inst
abd/inst/NEWS
abd/inst/README
abd/inst/THANKS
abd/man
abd/man/AlgaeCO2.Rd abd/man/Antilles.Rd abd/man/Aspirin.Rd abd/man/BeeGenes.Rd abd/man/BeeLifespans.Rd abd/man/Beetles.Rd abd/man/BirdSexRatio.Rd abd/man/Blackbirds.Rd abd/man/BodyFatHeatLoss.Rd abd/man/BrainExpression.Rd abd/man/BrookTrout.Rd abd/man/Cavalry.Rd abd/man/Chickadees.Rd abd/man/ChimpBrains.Rd abd/man/Cichlids.Rd abd/man/CichlidsGnRH.Rd abd/man/Clearcuts.Rd abd/man/CocaineDopamine.Rd abd/man/Convictions.Rd abd/man/ConvictionsAndIncome.Rd abd/man/Crickets.Rd abd/man/DEET.Rd abd/man/DaphniaLongevity.Rd abd/man/DaphniaResistance.Rd abd/man/DayOfBirth.Rd abd/man/DesertBirds.Rd abd/man/Dioecy.Rd abd/man/Dolphins.Rd abd/man/DungBeetles.Rd abd/man/Earthworms.Rd abd/man/Earwigs.Rd abd/man/Eelgrass.Rd abd/man/ElVerde.Rd abd/man/ElectricFish.Rd abd/man/EndangeredSpecies.Rd abd/man/FingerRatio.Rd abd/man/Fireflies.Rd abd/man/FireflyFlash.Rd abd/man/FlyTestes.Rd abd/man/FlycatcherPatch.Rd abd/man/GeneRegulation.Rd abd/man/GlidingSnakes.Rd abd/man/GodwitArrival.Rd abd/man/Grassland.Rd abd/man/GreatTitMalaria.Rd abd/man/Greenspace.Rd abd/man/Guppies.Rd abd/man/Hemoglobin.Rd abd/man/HippocampusLesions.Rd abd/man/HornedLizards.Rd abd/man/HumanBodyTemp.Rd abd/man/HumanGeneLengths.Rd abd/man/Hurricanes.Rd abd/man/Iguanas.Rd abd/man/IntertidalAlgae.Rd abd/man/JetLagKnees.Rd abd/man/KenyaFinches.Rd abd/man/LanguageBrains.Rd abd/man/LarvalFish.Rd abd/man/Lefthanded.Rd abd/man/LionCubs.Rd abd/man/LionNoses.Rd abd/man/LiverPreparation.Rd abd/man/LizardBite.Rd abd/man/LizardSprint.Rd abd/man/Lobsters.Rd abd/man/LodgepolePines.Rd abd/man/LupusMice.Rd abd/man/Lynx.Rd abd/man/MarineReserve.Rd abd/man/MassExtinctions.Rd abd/man/MoleRats.Rd abd/man/Mosquitoes.Rd abd/man/MouseEmpathy.Rd abd/man/NeanderthalBrains.Rd abd/man/NematodeLifespan.Rd abd/man/NeotropicalTrees.Rd abd/man/Newts.Rd abd/man/NoSmokingDay.Rd abd/man/NorthSeaCod.Rd abd/man/OstrichTemp.Rd abd/man/Penguins.Rd abd/man/PlantPersistence.Rd abd/man/Pollen.Rd abd/man/Powerball.Rd abd/man/PrimateMetabolism.Rd abd/man/PrimateWBC.Rd abd/man/ProgesteroneExercise.Rd abd/man/Pseudoscorpions.Rd abd/man/Pufferfish.Rd abd/man/Rattlesnakes.Rd abd/man/Rigormortis.Rd abd/man/RopeTrick.Rd abd/man/SagebrushCrickets.Rd abd/man/SalmonColor.Rd abd/man/Seedlings.Rd abd/man/Selection.Rd abd/man/SexualSelection.Rd abd/man/ShadParasites.Rd abd/man/ShrinkingSeals.Rd abd/man/ShuttleDisaster.Rd abd/man/Silversword.Rd abd/man/SleepAndPerformance.Rd abd/man/SockeyeFemales.Rd abd/man/Sparrows.Rd abd/man/SpiderColonies.Rd abd/man/SpiderSpeed.Rd abd/man/Stalkies1.Rd abd/man/Stalkies2.Rd abd/man/SticklebackPlates.Rd abd/man/SticklebackPreference.Rd abd/man/Sumo.Rd abd/man/SyrupSwimming.Rd abd/man/TeenDeaths.Rd abd/man/Telomeres.Rd abd/man/TimeOfDeath.Rd abd/man/Toads.Rd abd/man/Tobacco.Rd abd/man/Tobacco2.Rd abd/man/ToothAge.Rd abd/man/TreeSeedlings.Rd abd/man/Trematodes.Rd abd/man/Trillium.Rd abd/man/Truffles.Rd abd/man/TsetseLearning.Rd abd/man/TwoKids.Rd abd/man/VampireBites.Rd abd/man/VasopressinVoles.Rd abd/man/Vines.Rd abd/man/VoleDispersal.Rd abd/man/WalkingStickFemurs.Rd abd/man/WalkingStickHeads.Rd abd/man/WeddellSeals.Rd abd/man/WillsDebates.Rd abd/man/WillsPresidents.Rd abd/man/WolfTeeth.Rd abd/man/Wolves.Rd abd/man/WorldCup.Rd abd/man/WrasseSexes.Rd abd/man/YeastGenes.Rd abd/man/ZebraFinchBeaks.Rd abd/man/ZebraFinches.Rd abd/man/ZooMortality.Rd abd/man/Zooplankton.Rd abd/man/abd-package.Rd abd/man/abdData.Rd abd/man/as.xtabs.Rd abd/man/col.abd.Rd abd/man/cumfreq.Rd abd/man/cv.Rd abd/man/dataInfo.Rd abd/man/expand.dft.Rd abd/man/favstats.Rd abd/man/histochart.Rd abd/man/interval.Rd abd/man/meanCI.Rd abd/man/odds.ratio.Rd abd/man/sample.Rd abd/man/se.Rd abd/man/sum_of_squares.Rd abd/man/wilsonCI.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.