getContrCombs: getContrCombs

In bayesdnamix: Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models

Description

getContrCombs is a helpfunction to specify all possible combined genotypes for a give hypothesis.

Usage

getContrCombs(Alist, nC, symmetry = FALSE, refs = NULL, condOrder = NULL,
  complete = TRUE)

Arguments

Alist	Vector of possible alleles
nC	Number of contributors in model.
symmetry	Boolean of whether all combinations should be considered (permutation/combination)
refs	List of contributors [[s]] where list-element 's' is the reference index with genotype vector ("A1","A2"). #'
condOrder	Specify conditioning references in refs (must be consistent order). For instance condOrder=(0,2,1,0) means that we restrict the model such that Ref2 and Ref3 are respectively conditioned as 2. contributor and 1. contributor in the model.
complete	Boolean for requiring the set of combinations to fill the Alist.

Details

Note: If a reference is unselected, it as numeric() in its loci

The allele-names are coded with a ascii-symbol to have threat more than 10-alleles in a loci.

Value

A matrix where each row represents a genotype combination, while each column correspond to a contributor

Author(s)

Oyvind Bleka <Oyvind.Bleka.at.fhi.no>

bayesdnamix documentation built on May 2, 2019, 6:51 p.m.