Description Usage Arguments Details Value Author(s)
View source: R/getContrCombs.R
getContrCombs is a helpfunction to specify all possible combined genotypes for a give hypothesis.
1 2 | getContrCombs(Alist, nC, symmetry = FALSE, refs = NULL, condOrder = NULL,
complete = TRUE)
|
Alist |
Vector of possible alleles |
nC |
Number of contributors in model. |
symmetry |
Boolean of whether all combinations should be considered (permutation/combination) |
refs |
List of contributors [[s]] where list-element 's' is the reference index with genotype vector ("A1","A2"). #' |
condOrder |
Specify conditioning references in refs (must be consistent order). For instance condOrder=(0,2,1,0) means that we restrict the model such that Ref2 and Ref3 are respectively conditioned as 2. contributor and 1. contributor in the model. |
complete |
Boolean for requiring the set of combinations to fill the Alist. |
Note: If a reference is unselected, it as numeric() in its loci
The allele-names are coded with a ascii-symbol to have threat more than 10-alleles in a loci.
A matrix where each row represents a genotype combination, while each column correspond to a contributor
Oyvind Bleka <Oyvind.Bleka.at.fhi.no>
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