betapart: Partitioning Beta Diversity into Turnover and Nestedness Components

Functions to compute pair-wise dissimilarities (distance matrices) and multiple-site dissimilarities, separating the turnover and nestedness-resultant components of taxonomic (incidence and abundance based), functional and phylogenetic beta diversity.

Author
Andres Baselga, David Orme, Sebastien Villeger, Julien De Bortoli and Fabien Leprieur
Date of publication
2016-09-23 10:16:54
Maintainer
Andres Baselga <andres.baselga@usc.es>
License
GPL (>= 2)
Version
1.4

View on R-Forge

Man pages

bbsData
BBS data by state for two timeslices
beta.multi
Multiple-site dissimilarities
beta.multi.abund
Abundance-based multiple-site dissimilarities
beta.pair
Incidence-based pair-wise dissimilarities
beta.pair.abund
Abundance-based pair-wise dissimilarities
betapart.core
Core calculations of betapart
betapart.core.abund
Core calculations of betapart for abundance-based...
betapart-package
Partitioning beta diversity into turnover and nestedness...
beta.sample
Resampling multiple-site dissimilarity for n sites
beta.sample.abund
Resampling abundance-based multiple-site dissimilarity for n...
beta.temp
Temporal change in community composition
bray.part
Partitioning pair-wise Bray-Curtis dissimilarities
ceram.n
Cerambycidae from Northern European Countries
ceram.s
Cerambycidae from Southern European Countries
functional.beta.multi
Multiple-site functional dissimilarities
functional.beta.pair
Pair-wise functional dissimilarities
functional.betapart.core
Core calculations of functional dissimilarities metrics

Files in this package

betapart/.Rinstignore
betapart/DESCRIPTION
betapart/NAMESPACE
betapart/R
betapart/R/beta-multi-abund.R
betapart/R/beta-pair-abund.R
betapart/R/beta-sample-abund.R
betapart/R/beta-sample.R
betapart/R/beta-temporal.R
betapart/R/betapart-core-abund.R
betapart/R/betapart-core.R
betapart/R/betapart.R
betapart/R/bray-part.R
betapart/R/functional.beta.multi.R
betapart/R/functional.beta.pair.R
betapart/R/functional.betapart.core.R
betapart/R/phylo.beta.multi.r
betapart/R/phylo.beta.pair.r
betapart/R/phylo.betapart.core.r
betapart/data
betapart/data/bbsData.rda
betapart/data/ceram.n.txt.xz
betapart/data/ceram.s.txt.xz
betapart/man
betapart/man/bbsData.Rd
betapart/man/beta.multi.Rd
betapart/man/beta.multi.abund.Rd
betapart/man/beta.pair.Rd
betapart/man/beta.pair.abund.Rd
betapart/man/beta.sample.Rd
betapart/man/beta.sample.abund.Rd
betapart/man/beta.temp.Rd
betapart/man/betapart-package.Rd
betapart/man/betapart.core.Rd
betapart/man/betapart.core.abund.Rd
betapart/man/bray.part.Rd
betapart/man/ceram.n.Rd
betapart/man/ceram.s.Rd
betapart/man/functional.beta.multi.Rd
betapart/man/functional.beta.pair.Rd
betapart/man/functional.betapart.core.Rd
betapart/man/phylo.beta.multi.rd
betapart/man/phylo.beta.pair.rd
betapart/man/phylo.betapart.core.rd