blockDemac: parallel DEMC with several parameter blocks

Parallel version of a DEMC differential evolution markov chain. DEMC is a variant of MCMC monte carlo markov chain. Different subsets, i.e. blocks, of parameter vector, can be updated by different logDensity functions or different Gibbs samplers.

AuthorThomas Wutzler
Date of publication2016-04-26 06:54:14
MaintainerThomas Wutzler <twutz@bgc-jena.mpg.de>
LicenseGPL (>=2)
Version0.9.217

View on R-Forge

Files in this package

blockDemac/DESCRIPTION
blockDemac/NAMESPACE
blockDemac/R
blockDemac/R/AcceptanceTracker.R blockDemac/R/AcceptanceTrackerSettings.R blockDemac/R/BatchSampler.R blockDemac/R/BlockDimensions.R blockDemac/R/BlockDimensionsImpl.R blockDemac/R/BlockIndices.R blockDemac/R/BlockSpecification.R blockDemac/R/BlockUpdater.R blockDemac/R/BlockUpdaterMock.R blockDemac/R/BlockUpdaters.R blockDemac/R/ChainSampler.R blockDemac/R/ChainSamplerImpl.R blockDemac/R/ChainState.R blockDemac/R/DEJumpProposer.R blockDemac/R/DESettings.R blockDemac/R/DependenceIndices.R blockDemac/R/FunctionBasedBlockUpdater.R blockDemac/R/GaussProcessModelDescripancy.R blockDemac/R/IntermediateSpecification.R blockDemac/R/IntermediateUpdater.R blockDemac/R/IntermediateUpdaters.R blockDemac/R/InternalMetropolisBlockUpdater.R blockDemac/R/JumpProposer.R blockDemac/R/MetropolisBlockUpdater.R blockDemac/R/PopulationSampler.R blockDemac/R/SampleDimensions.R blockDemac/R/SampleDimensionsImpl.R blockDemac/R/SampleLogChain.R blockDemac/R/SampleLogChainImpl.R blockDemac/R/SampleLogPopulation.R blockDemac/R/SampleLogs.R blockDemac/R/SettingsWithDefaults.R blockDemac/R/StepInfo.R blockDemac/R/StepInfoImpl.R blockDemac/R/StepInfoRangeImpl.R blockDemac/R/SubSpace.R blockDemac/R/den2dCor.R blockDemac/R/fixtureChainSampler.R blockDemac/R/fixtureLinreg1.R blockDemac/R/fixtureMultiVariateNormalProblem.R blockDemac/R/fixturePopulationSamplerMock.R blockDemac/R/fixtureSampleDimensions.R blockDemac/R/fixtureSampleLogs.R blockDemac/R/invChiSquareBlockUpdater.R blockDemac/R/invGamma.R blockDemac/R/linearModelFunctionExample.R blockDemac/R/nameSpace.R blockDemac/R/sampleRange.R blockDemac/R/stopDemac.R blockDemac/R/temperatureDecreaseExponential.R blockDemac/R/toSort.R blockDemac/R/util.R blockDemac/R/zz.R
blockDemac/build
blockDemac/build/vignette.rds
blockDemac/depr
blockDemac/depr/GaussProcessModelDescripancy2.R
blockDemac/depr/acceptedPosY.R
blockDemac/depr/memoize.R
blockDemac/depr/multiModal.R
blockDemac/depr/tempDec.R
blockDemac/inst
blockDemac/inst/TwoDenGP
blockDemac/inst/TwoDenGP/GPExample.Rmd
blockDemac/inst/TwoDenGP/GPGradient.R
blockDemac/inst/TwoDenGP/TwoDenGP.Rmd
blockDemac/inst/TwoDenGP/readme.txt
blockDemac/inst/develop
blockDemac/inst/develop/ClassDiagram.graphml
blockDemac/inst/develop/ClusterControlFlow.graphml
blockDemac/inst/develop/GPBlocks.graphml
blockDemac/inst/develop/SamplingObsUncertainty.html
blockDemac/inst/develop/SimpleSingleModel.html
blockDemac/inst/develop/TwoDen.html
blockDemac/inst/develop/developmentNotes.md
blockDemac/inst/develop/glossary.md
blockDemac/inst/develop/profiling.R
blockDemac/inst/develop/test_BlockUpdatersDep.graphml
blockDemac/inst/doc
blockDemac/inst/doc/SamplingObsUncertainty.Rmd
blockDemac/inst/doc/SamplingObsUncertainty.html
blockDemac/inst/doc/SimpleSingleModel.Rmd
blockDemac/inst/doc/SimpleSingleModel.html
blockDemac/inst/doc/TwoDen.Rmd
blockDemac/inst/doc/TwoDen.html
blockDemac/inst/doc/TwoDenGP.Rmd
blockDemac/inst/doc/TwoDenGP.html
blockDemac/inst/genData
blockDemac/inst/genData/blockDemac-package.Rd
blockDemac/inst/scratch
blockDemac/inst/scratch/divideTwDEMS_beforeT.R
blockDemac/inst/scratch/profileChainSampler.R
blockDemac/inst/scratch/profileTwoDen.R
blockDemac/inst/scratch/profileTwoDenIntermediate.R
blockDemac/inst/scratch/thetaHatRaftery07.R
blockDemac/inst/testCases
blockDemac/inst/testCases/getIPopulationsForChains.R
blockDemac/inst/tests
blockDemac/inst/tests/test_AcceptanceTracker.R
blockDemac/inst/tests/test_BatchSampler.R
blockDemac/inst/tests/test_BlockDimensionsImpl.R
blockDemac/inst/tests/test_BlockSpecification.R
blockDemac/inst/tests/test_BlockUpdater.R
blockDemac/inst/tests/test_BlockUpdaters.R
blockDemac/inst/tests/test_BlockUpdaters_updateChainState.R
blockDemac/inst/tests/test_ChainSamplerImpl.R
blockDemac/inst/tests/test_ChainState.R
blockDemac/inst/tests/test_DEJumpProposer.R
blockDemac/inst/tests/test_DEJumpProposer_SeveralGroups.R
blockDemac/inst/tests/test_DESettings.R
blockDemac/inst/tests/test_FunctionBasedBlockUpdater.R
blockDemac/inst/tests/test_GPSampling.R
blockDemac/inst/tests/test_IntermediateUpdaters.R
blockDemac/inst/tests/test_InternalMetropolisBlockUpdater.R
blockDemac/inst/tests/test_MetropolisBlockUpdater.R
blockDemac/inst/tests/test_PopulationSampler.R
blockDemac/inst/tests/test_PopulationSamplerCluster.R
blockDemac/inst/tests/test_SampleDimensionsImpl.R
blockDemac/inst/tests/test_SampleLogs.R
blockDemac/inst/tests/test_StepInfoImpl.R
blockDemac/inst/tests/test_StepInfoRangeImpl.R
blockDemac/inst/tests/test_SubSpace.R
blockDemac/inst/tests/test_initChainStates.R
blockDemac/inst/tests/test_mvnormOpt.R
blockDemac/inst/tests/test_sampleRange.R
blockDemac/inst/tests_integration
blockDemac/inst/tests_integration/test_TwoDenEx1.R
blockDemac/inst/tests_integration/test_correlations.R
blockDemac/inst/tests_integration/test_den2dCor.R
blockDemac/inst/tests_integration/test_denNormal15.R
blockDemac/readme.txt
blockDemac/scratch
blockDemac/scratch/applyLB.R
blockDemac/scratch/demcStep_commonTemp.R
blockDemac/scratch/ggplot.R
blockDemac/scratch/ofMultiSum.R
blockDemac/scratch/scratch.R
blockDemac/scratch/twDEMC_multiMetSum.R
blockDemac/scratch/twDEMC_repeatT.R
blockDemac/scratch/twDEMC_seq.R
blockDemac/tests
blockDemac/tests/doRUnit.R
blockDemac/vignettes
blockDemac/vignettes/SamplingObsUncertainty.Rmd
blockDemac/vignettes/SimpleSingleModel.Rmd
blockDemac/vignettes/TwoDen.Rmd
blockDemac/vignettes/TwoDenGP.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.