blockDemac: parallel DEMC with several parameter blocks

Parallel version of a DEMC differential evolution markov chain. DEMC is a variant of MCMC monte carlo markov chain. Different subsets, i.e. blocks, of parameter vector, can be updated by different logDensity functions or different Gibbs samplers.

AuthorThomas Wutzler
Date of publication2016-04-26 06:54:14
MaintainerThomas Wutzler <twutz@bgc-jena.mpg.de>
LicenseGPL (>=2)
Version0.9.217

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Functions

Files

DESCRIPTION
NAMESPACE
R
R/AcceptanceTracker.R R/AcceptanceTrackerSettings.R R/BatchSampler.R R/BlockDimensions.R R/BlockDimensionsImpl.R R/BlockIndices.R R/BlockSpecification.R R/BlockUpdater.R R/BlockUpdaterMock.R R/BlockUpdaters.R R/ChainSampler.R R/ChainSamplerImpl.R R/ChainState.R R/DEJumpProposer.R R/DESettings.R R/DependenceIndices.R R/FunctionBasedBlockUpdater.R R/GaussProcessModelDescripancy.R R/IntermediateSpecification.R R/IntermediateUpdater.R R/IntermediateUpdaters.R R/InternalMetropolisBlockUpdater.R R/JumpProposer.R R/MetropolisBlockUpdater.R R/PopulationSampler.R R/SampleDimensions.R R/SampleDimensionsImpl.R R/SampleLogChain.R R/SampleLogChainImpl.R R/SampleLogPopulation.R R/SampleLogs.R R/SettingsWithDefaults.R R/StepInfo.R R/StepInfoImpl.R R/StepInfoRangeImpl.R R/SubSpace.R R/den2dCor.R R/fixtureChainSampler.R R/fixtureLinreg1.R R/fixtureMultiVariateNormalProblem.R R/fixturePopulationSamplerMock.R R/fixtureSampleDimensions.R R/fixtureSampleLogs.R R/invChiSquareBlockUpdater.R R/invGamma.R R/linearModelFunctionExample.R R/nameSpace.R R/sampleRange.R R/stopDemac.R R/temperatureDecreaseExponential.R R/toSort.R R/util.R R/zz.R
build
build/vignette.rds
depr
depr/GaussProcessModelDescripancy2.R depr/acceptedPosY.R depr/memoize.R depr/multiModal.R depr/tempDec.R
inst
inst/TwoDenGP
inst/TwoDenGP/GPExample.Rmd
inst/TwoDenGP/GPGradient.R
inst/TwoDenGP/TwoDenGP.Rmd
inst/TwoDenGP/readme.txt
inst/develop
inst/develop/ClassDiagram.graphml
inst/develop/ClusterControlFlow.graphml
inst/develop/GPBlocks.graphml
inst/develop/SamplingObsUncertainty.html
inst/develop/SimpleSingleModel.html
inst/develop/TwoDen.html
inst/develop/developmentNotes.md
inst/develop/glossary.md
inst/develop/profiling.R
inst/develop/test_BlockUpdatersDep.graphml
inst/doc
inst/doc/SamplingObsUncertainty.Rmd
inst/doc/SamplingObsUncertainty.html
inst/doc/SimpleSingleModel.Rmd
inst/doc/SimpleSingleModel.html
inst/doc/TwoDen.Rmd
inst/doc/TwoDen.html
inst/doc/TwoDenGP.Rmd
inst/doc/TwoDenGP.html
inst/genData
inst/genData/blockDemac-package.Rd
inst/scratch
inst/scratch/divideTwDEMS_beforeT.R inst/scratch/profileChainSampler.R inst/scratch/profileTwoDen.R inst/scratch/profileTwoDenIntermediate.R inst/scratch/thetaHatRaftery07.R
inst/testCases
inst/testCases/getIPopulationsForChains.R
inst/tests
inst/tests/test_AcceptanceTracker.R inst/tests/test_BatchSampler.R inst/tests/test_BlockDimensionsImpl.R inst/tests/test_BlockSpecification.R inst/tests/test_BlockUpdater.R inst/tests/test_BlockUpdaters.R inst/tests/test_BlockUpdaters_updateChainState.R inst/tests/test_ChainSamplerImpl.R inst/tests/test_ChainState.R inst/tests/test_DEJumpProposer.R inst/tests/test_DEJumpProposer_SeveralGroups.R inst/tests/test_DESettings.R inst/tests/test_FunctionBasedBlockUpdater.R inst/tests/test_GPSampling.R inst/tests/test_IntermediateUpdaters.R inst/tests/test_InternalMetropolisBlockUpdater.R inst/tests/test_MetropolisBlockUpdater.R inst/tests/test_PopulationSampler.R inst/tests/test_PopulationSamplerCluster.R inst/tests/test_SampleDimensionsImpl.R inst/tests/test_SampleLogs.R inst/tests/test_StepInfoImpl.R inst/tests/test_StepInfoRangeImpl.R inst/tests/test_SubSpace.R inst/tests/test_initChainStates.R inst/tests/test_mvnormOpt.R inst/tests/test_sampleRange.R
inst/tests_integration
inst/tests_integration/test_TwoDenEx1.R inst/tests_integration/test_correlations.R inst/tests_integration/test_den2dCor.R inst/tests_integration/test_denNormal15.R
readme.txt
scratch
scratch/applyLB.R scratch/demcStep_commonTemp.R scratch/ggplot.R scratch/ofMultiSum.R scratch/scratch.R scratch/twDEMC_multiMetSum.R scratch/twDEMC_repeatT.R scratch/twDEMC_seq.R
tests
tests/doRUnit.R
vignettes
vignettes/SamplingObsUncertainty.Rmd
vignettes/SimpleSingleModel.Rmd
vignettes/TwoDen.Rmd
vignettes/TwoDenGP.Rmd

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