blockDemac: parallel DEMC with several parameter blocks

Parallel version of a DEMC differential evolution markov chain. DEMC is a variant of MCMC monte carlo markov chain. Different subsets, i.e. blocks, of parameter vector, can be updated by different logDensity functions or different Gibbs samplers.

Author
Thomas Wutzler
Date of publication
2016-04-26 06:54:14
Maintainer
Thomas Wutzler <twutz@bgc-jena.mpg.de>
License
GPL (>=2)
Version
0.9.217

View on R-Forge

Files in this package

blockDemac/DESCRIPTION
blockDemac/NAMESPACE
blockDemac/R
blockDemac/R/AcceptanceTracker.R
blockDemac/R/AcceptanceTrackerSettings.R
blockDemac/R/BatchSampler.R
blockDemac/R/BlockDimensions.R
blockDemac/R/BlockDimensionsImpl.R
blockDemac/R/BlockIndices.R
blockDemac/R/BlockSpecification.R
blockDemac/R/BlockUpdater.R
blockDemac/R/BlockUpdaterMock.R
blockDemac/R/BlockUpdaters.R
blockDemac/R/ChainSampler.R
blockDemac/R/ChainSamplerImpl.R
blockDemac/R/ChainState.R
blockDemac/R/DEJumpProposer.R
blockDemac/R/DESettings.R
blockDemac/R/DependenceIndices.R
blockDemac/R/FunctionBasedBlockUpdater.R
blockDemac/R/GaussProcessModelDescripancy.R
blockDemac/R/IntermediateSpecification.R
blockDemac/R/IntermediateUpdater.R
blockDemac/R/IntermediateUpdaters.R
blockDemac/R/InternalMetropolisBlockUpdater.R
blockDemac/R/JumpProposer.R
blockDemac/R/MetropolisBlockUpdater.R
blockDemac/R/PopulationSampler.R
blockDemac/R/SampleDimensions.R
blockDemac/R/SampleDimensionsImpl.R
blockDemac/R/SampleLogChain.R
blockDemac/R/SampleLogChainImpl.R
blockDemac/R/SampleLogPopulation.R
blockDemac/R/SampleLogs.R
blockDemac/R/SettingsWithDefaults.R
blockDemac/R/StepInfo.R
blockDemac/R/StepInfoImpl.R
blockDemac/R/StepInfoRangeImpl.R
blockDemac/R/SubSpace.R
blockDemac/R/den2dCor.R
blockDemac/R/fixtureChainSampler.R
blockDemac/R/fixtureLinreg1.R
blockDemac/R/fixtureMultiVariateNormalProblem.R
blockDemac/R/fixturePopulationSamplerMock.R
blockDemac/R/fixtureSampleDimensions.R
blockDemac/R/fixtureSampleLogs.R
blockDemac/R/invChiSquareBlockUpdater.R
blockDemac/R/invGamma.R
blockDemac/R/linearModelFunctionExample.R
blockDemac/R/nameSpace.R
blockDemac/R/sampleRange.R
blockDemac/R/stopDemac.R
blockDemac/R/temperatureDecreaseExponential.R
blockDemac/R/toSort.R
blockDemac/R/util.R
blockDemac/R/zz.R
blockDemac/build
blockDemac/build/vignette.rds
blockDemac/depr
blockDemac/depr/GaussProcessModelDescripancy2.R
blockDemac/depr/acceptedPosY.R
blockDemac/depr/memoize.R
blockDemac/depr/multiModal.R
blockDemac/depr/tempDec.R
blockDemac/inst
blockDemac/inst/TwoDenGP
blockDemac/inst/TwoDenGP/GPExample.Rmd
blockDemac/inst/TwoDenGP/GPGradient.R
blockDemac/inst/TwoDenGP/TwoDenGP.Rmd
blockDemac/inst/TwoDenGP/readme.txt
blockDemac/inst/develop
blockDemac/inst/develop/ClassDiagram.graphml
blockDemac/inst/develop/ClusterControlFlow.graphml
blockDemac/inst/develop/GPBlocks.graphml
blockDemac/inst/develop/SamplingObsUncertainty.html
blockDemac/inst/develop/SimpleSingleModel.html
blockDemac/inst/develop/TwoDen.html
blockDemac/inst/develop/developmentNotes.md
blockDemac/inst/develop/glossary.md
blockDemac/inst/develop/profiling.R
blockDemac/inst/develop/test_BlockUpdatersDep.graphml
blockDemac/inst/doc
blockDemac/inst/doc/SamplingObsUncertainty.Rmd
blockDemac/inst/doc/SamplingObsUncertainty.html
blockDemac/inst/doc/SimpleSingleModel.Rmd
blockDemac/inst/doc/SimpleSingleModel.html
blockDemac/inst/doc/TwoDen.Rmd
blockDemac/inst/doc/TwoDen.html
blockDemac/inst/doc/TwoDenGP.Rmd
blockDemac/inst/doc/TwoDenGP.html
blockDemac/inst/genData
blockDemac/inst/genData/blockDemac-package.Rd
blockDemac/inst/scratch
blockDemac/inst/scratch/divideTwDEMS_beforeT.R
blockDemac/inst/scratch/profileChainSampler.R
blockDemac/inst/scratch/profileTwoDen.R
blockDemac/inst/scratch/profileTwoDenIntermediate.R
blockDemac/inst/scratch/thetaHatRaftery07.R
blockDemac/inst/testCases
blockDemac/inst/testCases/getIPopulationsForChains.R
blockDemac/inst/tests
blockDemac/inst/tests/test_AcceptanceTracker.R
blockDemac/inst/tests/test_BatchSampler.R
blockDemac/inst/tests/test_BlockDimensionsImpl.R
blockDemac/inst/tests/test_BlockSpecification.R
blockDemac/inst/tests/test_BlockUpdater.R
blockDemac/inst/tests/test_BlockUpdaters.R
blockDemac/inst/tests/test_BlockUpdaters_updateChainState.R
blockDemac/inst/tests/test_ChainSamplerImpl.R
blockDemac/inst/tests/test_ChainState.R
blockDemac/inst/tests/test_DEJumpProposer.R
blockDemac/inst/tests/test_DEJumpProposer_SeveralGroups.R
blockDemac/inst/tests/test_DESettings.R
blockDemac/inst/tests/test_FunctionBasedBlockUpdater.R
blockDemac/inst/tests/test_GPSampling.R
blockDemac/inst/tests/test_IntermediateUpdaters.R
blockDemac/inst/tests/test_InternalMetropolisBlockUpdater.R
blockDemac/inst/tests/test_MetropolisBlockUpdater.R
blockDemac/inst/tests/test_PopulationSampler.R
blockDemac/inst/tests/test_PopulationSamplerCluster.R
blockDemac/inst/tests/test_SampleDimensionsImpl.R
blockDemac/inst/tests/test_SampleLogs.R
blockDemac/inst/tests/test_StepInfoImpl.R
blockDemac/inst/tests/test_StepInfoRangeImpl.R
blockDemac/inst/tests/test_SubSpace.R
blockDemac/inst/tests/test_initChainStates.R
blockDemac/inst/tests/test_mvnormOpt.R
blockDemac/inst/tests/test_sampleRange.R
blockDemac/inst/tests_integration
blockDemac/inst/tests_integration/test_TwoDenEx1.R
blockDemac/inst/tests_integration/test_correlations.R
blockDemac/inst/tests_integration/test_den2dCor.R
blockDemac/inst/tests_integration/test_denNormal15.R
blockDemac/readme.txt
blockDemac/scratch
blockDemac/scratch/applyLB.R
blockDemac/scratch/demcStep_commonTemp.R
blockDemac/scratch/ggplot.R
blockDemac/scratch/ofMultiSum.R
blockDemac/scratch/scratch.R
blockDemac/scratch/twDEMC_multiMetSum.R
blockDemac/scratch/twDEMC_repeatT.R
blockDemac/scratch/twDEMC_seq.R
blockDemac/tests
blockDemac/tests/doRUnit.R
blockDemac/vignettes
blockDemac/vignettes/SamplingObsUncertainty.Rmd
blockDemac/vignettes/SimpleSingleModel.Rmd
blockDemac/vignettes/TwoDen.Rmd
blockDemac/vignettes/TwoDenGP.Rmd