cRacker: R-script suite for automated processing of proteomic peptide lists

cRacker has been programmed to automate standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. The applied normalization strategies are optimized for label free analyses of peptide intensities but also experiments using labeling approaches can be analyzed.

AuthorHenrik Zauber
Date of publication2013-08-29 06:39:40
MaintainerHenrik Zauber <Zauber@mpimp-golm.mpg.de>
LicenseGNU General Public License
Version1.496

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Files

DESCRIPTION
NAMESPACE
R
R/ReadAffy.R R/cRacker.starter.R R/help.button.R R/help.tk.R R/hz.agg.fun.R R/hz.aov.R R/hz.brake.strings.R R/hz.change.nodePar.R R/hz.cracker.default.settings.R R/hz.design.R R/hz.exp.des.parse.R R/hz.function.file.R R/hz.go.input.R R/hz.identifier.import.R R/hz.import.R R/hz.import.config.modifier.R R/hz.inf.replace.R R/hz.info.search.R R/hz.library.fasta.R R/hz.loading.cracker.functions.R R/hz.matrix.creator.R R/hz.merge.control.R R/hz.norm.R R/hz.oneside.ttest.R R/hz.parameter.report.R R/hz.path.empai.R R/hz.path.set.R R/hz.read.empai.parameters.R R/hz.read.parameters.R R/hz.redefine.settings.R R/hz.remove.data.R R/hz.row.plot.R R/hz.save.control.R R/hz.script.R R/hz.script.anova.R R/hz.script.bp.R R/hz.script.exp.design.R R/hz.script.go.terms.R R/hz.script.graph.R R/hz.script.heatmap.R R/hz.script.heatmap2.R R/hz.script.heatmap2.time.R R/hz.script.hiercl.R R/hz.script.kmeans.R R/hz.script.kmeans.timeboxplots.R R/hz.script.kmeans.timeplots.R R/hz.script.pca.R R/hz.script.phospho.R R/hz.script.plot.main.R R/hz.script.row.plot.R R/hz.script.volcano.R R/hz.script.y.lab.R R/hz.shape.R R/hz.show.path.R R/hz.temp.order.fun.R R/hz.volcano.mapping.barplot.R R/hz.write.design.R R/hz.write.table.R R/image.button.R R/pb.modified.R R/start-cRacker.R
data
data/cRacker-logo-grey.pnm
data/cRackerEmPAI-Arabidopsis_20110903
data/cRackerMapping-ATH_GO_GOSLIM
data/cRackerMapping-Ath-AGI-TAIR9-Jan2010-cut2
data/cRackerMapping-Ath-AGI-TAIR9-Jan2010-cut3
data/cRackerMapping-Ath_AGI_TAIR9_Jan2010
data/cRackerMapping-Suba3-2012-10-27_4-18
data/cRackerSequence-Arabidopsis_20110903
data/cracker.ui.tk.rda
data/datalist
data/help-file.csv.gz
data/hz.script.Rdata
data/import-binary.Rdata
data/import-config
data/settings-standard.Rdata
data/settings.Rdata
data/testCrackerSILAC
man
man/cRacker-package.Rd man/cRacker.starter.Rd man/hz.script.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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