cRacker: R-script suite for automated processing of proteomic peptide lists

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cRacker has been programmed to automate standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares. The applied normalization strategies are optimized for label free analyses of peptide intensities but also experiments using labeling approaches can be analyzed.

Author
Henrik Zauber
Date of publication
2013-08-29 06:39:40
Maintainer
Henrik Zauber <Zauber@mpimp-golm.mpg.de>
License
GNU General Public License
Version
1.496

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Man pages

cRacker-package
a R-script suite for automated processing of proteomic...
cRacker.starter
Initial starter for cRacker
hz.script
Main cRacker script function

Files in this package

cRacker/DESCRIPTION
cRacker/NAMESPACE
cRacker/R
cRacker/R/ReadAffy.R
cRacker/R/cRacker.starter.R
cRacker/R/help.button.R
cRacker/R/help.tk.R
cRacker/R/hz.agg.fun.R
cRacker/R/hz.aov.R
cRacker/R/hz.brake.strings.R
cRacker/R/hz.change.nodePar.R
cRacker/R/hz.cracker.default.settings.R
cRacker/R/hz.design.R
cRacker/R/hz.exp.des.parse.R
cRacker/R/hz.function.file.R
cRacker/R/hz.go.input.R
cRacker/R/hz.identifier.import.R
cRacker/R/hz.import.R
cRacker/R/hz.import.config.modifier.R
cRacker/R/hz.inf.replace.R
cRacker/R/hz.info.search.R
cRacker/R/hz.library.fasta.R
cRacker/R/hz.loading.cracker.functions.R
cRacker/R/hz.matrix.creator.R
cRacker/R/hz.merge.control.R
cRacker/R/hz.norm.R
cRacker/R/hz.oneside.ttest.R
cRacker/R/hz.parameter.report.R
cRacker/R/hz.path.empai.R
cRacker/R/hz.path.set.R
cRacker/R/hz.read.empai.parameters.R
cRacker/R/hz.read.parameters.R
cRacker/R/hz.redefine.settings.R
cRacker/R/hz.remove.data.R
cRacker/R/hz.row.plot.R
cRacker/R/hz.save.control.R
cRacker/R/hz.script.R
cRacker/R/hz.script.anova.R
cRacker/R/hz.script.bp.R
cRacker/R/hz.script.exp.design.R
cRacker/R/hz.script.go.terms.R
cRacker/R/hz.script.graph.R
cRacker/R/hz.script.heatmap.R
cRacker/R/hz.script.heatmap2.R
cRacker/R/hz.script.heatmap2.time.R
cRacker/R/hz.script.hiercl.R
cRacker/R/hz.script.kmeans.R
cRacker/R/hz.script.kmeans.timeboxplots.R
cRacker/R/hz.script.kmeans.timeplots.R
cRacker/R/hz.script.pca.R
cRacker/R/hz.script.phospho.R
cRacker/R/hz.script.plot.main.R
cRacker/R/hz.script.row.plot.R
cRacker/R/hz.script.volcano.R
cRacker/R/hz.script.y.lab.R
cRacker/R/hz.shape.R
cRacker/R/hz.show.path.R
cRacker/R/hz.temp.order.fun.R
cRacker/R/hz.volcano.mapping.barplot.R
cRacker/R/hz.write.design.R
cRacker/R/hz.write.table.R
cRacker/R/image.button.R
cRacker/R/pb.modified.R
cRacker/R/start-cRacker.R
cRacker/data
cRacker/data/cRacker-logo-grey.pnm
cRacker/data/cRackerEmPAI-Arabidopsis_20110903
cRacker/data/cRackerMapping-ATH_GO_GOSLIM
cRacker/data/cRackerMapping-Ath-AGI-TAIR9-Jan2010-cut2
cRacker/data/cRackerMapping-Ath-AGI-TAIR9-Jan2010-cut3
cRacker/data/cRackerMapping-Ath_AGI_TAIR9_Jan2010
cRacker/data/cRackerMapping-Suba3-2012-10-27_4-18
cRacker/data/cRackerSequence-Arabidopsis_20110903
cRacker/data/cracker.ui.tk.rda
cRacker/data/datalist
cRacker/data/help-file.csv.gz
cRacker/data/hz.script.Rdata
cRacker/data/import-binary.Rdata
cRacker/data/import-config
cRacker/data/settings-standard.Rdata
cRacker/data/settings.Rdata
cRacker/data/testCrackerSILAC
cRacker/man
cRacker/man/cRacker-package.Rd
cRacker/man/cRacker.starter.Rd
cRacker/man/hz.script.Rd