calibFit: Statistical models and tools for assay calibration

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Provides basic S4 data structures and routines for calibration of bioassays. A variety of linear and nonlinear calibration curves can be fit to data. Most models have a Power of the Mean option for nonconstant variances. Unknown concentrations can be predicted from the calibration curve.

Author
Perry Haaland <perry_haaland@bd.com>, Daniel Samarov <daniel_samarov@bd.com>, Elaine McVey <elaine_mcvey@bd.com>
Date of publication
2013-03-25 21:27:50
Maintainer
Perry Haaland <perry_d_haaland@bd.com>
License
GPL-2
Version
2.1.0
URLs

View on R-Forge

Man pages

calib
Calibration function
calib-class
Object of class calib
calib.fit
General Standard Curve Fitting
calib.fit-class
General Standard Curve Fitting
coef
Method coef for 'calib' package
coefficients
Method coefficients for calib package
ELISA
Enzyme-Linked ImmunoSortbent Assay Data (ELISA)
experimentData
Experimental Dataset
fitted
Method fitted for calib.fit object.
fpl.model
Four Parameter Logistic Model
HPLC
High Performance Liquid Chromatography (HPLC) dataset
lin.model
Linear or Quadratic model.
loq
Limit of Quantization
mdc
Minimum Detectable Concentration
plot
Plot method
print
Method print for calib.fit object.
rdl
Reliable Detection Limit
resid
Method resid for package calib
residuals
Methods for Function residuals in Package calib
RIA
Radioimmunoassay
RIAy0
Radio Immunoassay
show
Methods for Function show in Package 'calib'
thpl.model
Three Parameter Logistic Model
tpl.model
Two Parameter Logistic Model

Files in this package

calibFit
calibFit/man
calibFit/man/thpl.model.Rd
calibFit/man/calib-class.Rd
calibFit/man/lin.model.Rd
calibFit/man/loq.Rd
calibFit/man/print.Rd
calibFit/man/coefficients.Rd
calibFit/man/RIA.Rd
calibFit/man/calib.fit.Rd
calibFit/man/calib.Rd
calibFit/man/calib.fit-class.Rd
calibFit/man/plot.Rd
calibFit/man/resid.Rd
calibFit/man/fitted.Rd
calibFit/man/RIAy0.Rd
calibFit/man/rdl.Rd
calibFit/man/tpl.model.Rd
calibFit/man/mdc.Rd
calibFit/man/fpl.model.Rd
calibFit/man/ELISA.Rd
calibFit/man/experimentData.Rd
calibFit/man/residuals.Rd
calibFit/man/coef.Rd
calibFit/man/show.Rd
calibFit/man/HPLC.Rd
calibFit/DESCRIPTION
calibFit/tests
calibFit/tests/doRUnit.R
calibFit/data
calibFit/data/RIAy0.txt.gz
calibFit/data/HPLC.txt.gz
calibFit/data/ELISA.txt.gz
calibFit/data/experimentData.txt.gz
calibFit/data/RIA.txt.gz
calibFit/NAMESPACE
calibFit/inst
calibFit/inst/doc
calibFit/inst/doc/references
calibFit/inst/doc/references/RDL_MDC.pdf
calibFit/inst/doc/references/RDL_MDC.Rnw
calibFit/inst/doc/HowTo-calib.pdf
calibFit/inst/doc/HowTo-calib.Rnw
calibFit/inst/unitTests
calibFit/inst/unitTests/runRUnitTests.R
calibFit/inst/unitTests/runit.calibFit.R
calibFit/inst/unitTests/Makefile
calibFit/inst/unitTests/data
calibFit/inst/unitTests/data/RUnitcalibFit.rda
calibFit/inst/unitTests/data/RUnitcalib.rda
calibFit/inst/unitTests/runit.calib.R
calibFit/R
calibFit/R/calib-accessors.R
calibFit/R/AllClasses.R
calibFit/R/calibplot-accessors.R
calibFit/R/AllGeneric.R
calibFit/R/calib-function.R
calibFit/R/calib-plotFunctions.R
calibFit/R/calibfit-diagnosticFunctions.R
calibFit/R/calibfit-accessors.R
calibFit/R/calibfit-models.R
calibFit/R/calibfit-function.R