cgenpp: Parallel genomic evaluations

Frequently used methods in genomic applications with emphasis on parallel computing

Author
Claas Heuer
Date of publication
2014-07-24 07:56:58
Maintainer
Claas Heuer <cheuer@tierzucht.uni-kiel.de>
License
GPL (>= 2)
Version
1.0

View on R-Forge

Man pages

ccolmv
Colwise means or variances
ccov
ccov
ccross
ccross
cCV
Generate phenotype vectors for cross validation
cGBLUP
Genomic BLUP
cgen-package
cgenpp - Parallel genomic evaluations
cgen-parallel
Multithreading using 'cgenpp'
cgrm
Genomic Relationship Matrices
cgrm.A
Additive Genomic Relationship Matrix
cgrm.D
Dominance Genomic Relationship Matrix
cGWAS
Genomewide Association Study
cGWAS.emmax
Genomewide Association Study - EMMAX
check_openmp
Check OpenMP-support.
clmm
Linear Mixed Models using Gibbs Sampling
clmm.CV
Cross Validation with Linear Mixed Models using Gibbs...
cmaf
cmaf
cpowop
Square matrix power operator
crossprodop
(Parallel) crossproduct operator
cscanx
Read in a matrix from a file
csolve
csolve
get_cor
Compute the prediction accuracy from Cross Validition
get_max_threads
Get the maximum number of threads available
get_num_threads
Get the number of threads for 'cgenpp'
get_pred
Extract predictions vectors of an object returned by...
rand_data
Generate random data for test purposes
set_num_threads
Set the number of OpenMP threads used by the functions of...

Files in this package

cgenpp/DESCRIPTION
cgenpp/NAMESPACE
cgenpp/R
cgenpp/R/cGWAS.R
cgenpp/R/clmm.R
cgenpp/R/ctools.R
cgenpp/R/zzz.R
cgenpp/man
cgenpp/man/cCV.Rd
cgenpp/man/cGBLUP.Rd
cgenpp/man/cGWAS.Rd
cgenpp/man/cGWAS.emmax.Rd
cgenpp/man/ccolmv.Rd
cgenpp/man/ccov.Rd
cgenpp/man/ccross.Rd
cgenpp/man/cgen-package.Rd
cgenpp/man/cgen-parallel.Rd
cgenpp/man/cgrm.A.Rd
cgenpp/man/cgrm.D.Rd
cgenpp/man/cgrm.Rd
cgenpp/man/check_openmp.Rd
cgenpp/man/clmm.CV.Rd
cgenpp/man/clmm.Rd
cgenpp/man/cmaf.Rd
cgenpp/man/cpowop.Rd
cgenpp/man/crossprodop.Rd
cgenpp/man/cscanx.Rd
cgenpp/man/csolve.Rd
cgenpp/man/get_cor.Rd
cgenpp/man/get_max_threads.Rd
cgenpp/man/get_num_threads.Rd
cgenpp/man/get_pred.Rd
cgenpp/man/rand_data.Rd
cgenpp/man/set_num_threads.Rd
cgenpp/src
cgenpp/src/Makevars
cgenpp/src/Makevars.win
cgenpp/src/R_sampler.h
cgenpp/src/actools.cpp
cgenpp/src/base_methods.h
cgenpp/src/base_methods_abstract.h
cgenpp/src/cGWAS.cpp
cgenpp/src/cGWAS.h
cgenpp/src/clmm.cpp
cgenpp/src/clmm.h
cgenpp/src/ctools.h
cgenpp/src/effects.h
cgenpp/src/function_base.h
cgenpp/src/functions.h
cgenpp/src/mcmc.h
cgenpp/src/mt_sampler.h