cgmisc: Various functions useful in computational genetics, e.g. GWAS.

Share:

Package contains various functions useful in computational genetics, e.g. in genome-wide association studies.

Author
Marcin Kierczak <marcin.kierczak@slu.se>
Date of publication
2013-04-17 11:32:57
Maintainer
Marcin Kierczak <marcin.kierczak@slu.se>
License
GPL (>=2.10)
Version
2.0

View on R-Forge

Man pages

cgmisc-package
Various functions useful in computational genetics
clump.markers
Clump markers according to their LD
compute.Fstats
Compute Fst fixation index for two populations
fstats.result
The 'fstats.result' class
plot.manhattan.LD
Plot LD pattern and MAF in a Manhattan plot

Files in this package

cgmisc/DESCRIPTION
cgmisc/NAMESPACE
cgmisc/R
cgmisc/R/clump.markers.R
cgmisc/R/compute.Fstats.R
cgmisc/R/fstats.result.R
cgmisc/R/plot.clumps.R
cgmisc/R/plot.manhattan.LD.R
cgmisc/data
cgmisc/data/cgmiscdat1.rda
cgmisc/data/datalist
cgmisc/inst
cgmisc/inst/doc
cgmisc/inst/doc/cgmisc.pdf
cgmisc/man
cgmisc/man/cgmisc-package.Rd
cgmisc/man/clump.markers.Rd
cgmisc/man/compute.Fstats.Rd
cgmisc/man/fstats.result.Rd
cgmisc/man/plot.manhattan.LD.Rd