Description Usage Arguments Details Value Author(s) See Also Examples
A function to get the dynamic time warping between SHAPE trace magnitudes.
1 | getTimeWarping(sample, base=sample[1,], margin=1)
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sample |
A numeric matrix containing values to be compared (e.g. a set of mutant SHAPE traces). |
base |
An optional numeric vector containing the values to which the samples are to be compared (e.g. a wildtype SHAPE trace). Default is the first trace in sample. |
margin |
An optional number indicating if the samples are organized by rows or columns, where 1 indicates rows and 2 indicates columns. Default is 1. |
This function calculates the dynamic time warping between the base vector and each row (or column) in sample.
A numeric vector of time warping values.
Chanin Tolson
1 2 3 4 5 6 7 8 | #sample data
sample = matrix(sample(1:100), ncol=10)
#normalize
samp_norm = normalize(sample)
#reduce noise
samp_nreduce = reduceNoise(samp_norm, trim=1, high=4)
#get time warping
tw = getTimeWarping(samp_nreduce)
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