clusterpathRcpp: Fast agglomerative convex clustering, original Rcpp implementation

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Implements the clusterpath, a clustering method in which all the clusters are solutions to a convex optimization problem with fusion penalties. This package uses the original Rcpp bindings to wrap the C++ implementation.

Author
Toby Dylan Hocking
Date of publication
2013-02-22 02:43:28
Maintainer
Toby Dylan Hocking <toby@sg.cs.titech.ac.jp>
License
GPL-3
Version
1.1

View on R-Forge

Man pages

alphacolnames
alphacolnames
assign.labels
assign labels
calcstats
calcstats
castbreakpoints
castbreakpoints
cluster3d
cluster3d
clusterings
clusterings
clusterpath.l1.general
clusterpath l1 general
clusterpath.l1.id
clusterpath l1 id
clusterpath.l2
clusterpath l2
clusterpath.l2.general
clusterpath l2 general
clusterpathRcpp-package
Fast agglomerative convex clustering, original Rcpp...
cluster.points
cluster points
cut.clusterpath
cut clusterpath
cut.clusterpath.labels
cut clusterpath labels
cvxcheck
cvxcheck
cvxmod.available
cvxmod available
cvxmod.cluster
cvxmod cluster
e.exponential
e exponential
e.exponential.auto
e exponential auto
e.usual
e usual
e.usual.k
e usual k
exponential.eigenvectors
exponential eigenvectors
fillin
fillin
gendata
gendata
get.best.eigenvectors
get best eigenvectors
get.old.best
get old best
halfmoon.cluster
halfmoon cluster
norm.rand.index
norm rand index
plot2d
plot2d
plot.clusterpath
plot clusterpath
plot.l2
plot l2
plotpath3d
plotpath3d
plotpathmatrix
plotpathmatrix
plot.predictclusterpath
plot predictclusterpath
predict.clusterpath
predict clusterpath
python.command
python command
usual.eigenvectors
usual eigenvectors

Files in this package

clusterpathRcpp
clusterpathRcpp/R
clusterpathRcpp/R/cut.R
clusterpathRcpp/R/cvx.R
clusterpathRcpp/R/interface.R
clusterpathRcpp/R/spectral.R
clusterpathRcpp/R/sim.R
clusterpathRcpp/R/plot.R
clusterpathRcpp/R/compare.R
clusterpathRcpp/exec
clusterpathRcpp/exec/cluster.py
clusterpathRcpp/NAMESPACE
clusterpathRcpp/inst
clusterpathRcpp/inst/cvxmod
clusterpathRcpp/inst/cvxmod/setsbase.py
clusterpathRcpp/inst/cvxmod/simpleatoms.py
clusterpathRcpp/inst/cvxmod/base.py
clusterpathRcpp/inst/cvxmod/util.py
clusterpathRcpp/inst/cvxmod/errors.py
clusterpathRcpp/inst/cvxmod/atoms
clusterpathRcpp/inst/cvxmod/atoms/sqrt.py
clusterpathRcpp/inst/cvxmod/atoms/inv.py
clusterpathRcpp/inst/cvxmod/atoms/log.py
clusterpathRcpp/inst/cvxmod/atoms/lse.py
clusterpathRcpp/inst/cvxmod/atoms/quadform.py
clusterpathRcpp/inst/cvxmod/atoms/logdet.py
clusterpathRcpp/inst/cvxmod/atoms/entropy.py
clusterpathRcpp/inst/cvxmod/atoms/base.py
clusterpathRcpp/inst/cvxmod/atoms/kl.py
clusterpathRcpp/inst/cvxmod/atoms/norm2.py
clusterpathRcpp/inst/cvxmod/atoms/__init__.py
clusterpathRcpp/inst/cvxmod/atoms/square.py
clusterpathRcpp/inst/cvxmod/atoms/power.py
clusterpathRcpp/inst/cvxmod/atoms/exp.py
clusterpathRcpp/inst/cvxmod/atoms/huber.py
clusterpathRcpp/inst/cvxmod/codegen.py
clusterpathRcpp/inst/cvxmod/sets
clusterpathRcpp/inst/cvxmod/sets/simplesets.py
clusterpathRcpp/inst/cvxmod/sets/__init__.py
clusterpathRcpp/inst/cvxmod/symbolic.py
clusterpathRcpp/inst/cvxmod/__init__.py
clusterpathRcpp/DESCRIPTION
clusterpathRcpp/etc
clusterpathRcpp/etc/xptr.R
clusterpathRcpp/etc/animation.R
clusterpathRcpp/etc/moons-sim.R
clusterpathRcpp/man
clusterpathRcpp/man/plot.predictclusterpath.Rd
clusterpathRcpp/man/cvxmod.available.Rd
clusterpathRcpp/man/norm.rand.index.Rd
clusterpathRcpp/man/get.best.eigenvectors.Rd
clusterpathRcpp/man/halfmoon.cluster.Rd
clusterpathRcpp/man/cut.clusterpath.labels.Rd
clusterpathRcpp/man/cvxcheck.Rd
clusterpathRcpp/man/fillin.Rd
clusterpathRcpp/man/e.usual.Rd
clusterpathRcpp/man/clusterpath.l2.general.Rd
clusterpathRcpp/man/cvxmod.cluster.Rd
clusterpathRcpp/man/clusterpath.l1.id.Rd
clusterpathRcpp/man/e.exponential.auto.Rd
clusterpathRcpp/man/alphacolnames.Rd
clusterpathRcpp/man/get.old.best.Rd
clusterpathRcpp/man/clusterpathRcpp-package.Rd
clusterpathRcpp/man/gendata.Rd
clusterpathRcpp/man/clusterpath.l2.Rd
clusterpathRcpp/man/predict.clusterpath.Rd
clusterpathRcpp/man/e.exponential.Rd
clusterpathRcpp/man/plotpathmatrix.Rd
clusterpathRcpp/man/e.usual.k.Rd
clusterpathRcpp/man/clusterings.Rd
clusterpathRcpp/man/usual.eigenvectors.Rd
clusterpathRcpp/man/cluster3d.Rd
clusterpathRcpp/man/python.command.Rd
clusterpathRcpp/man/calcstats.Rd
clusterpathRcpp/man/castbreakpoints.Rd
clusterpathRcpp/man/cluster.points.Rd
clusterpathRcpp/man/exponential.eigenvectors.Rd
clusterpathRcpp/man/plot.clusterpath.Rd
clusterpathRcpp/man/plotpath3d.Rd
clusterpathRcpp/man/plot2d.Rd
clusterpathRcpp/man/clusterpath.l1.general.Rd
clusterpathRcpp/man/cut.clusterpath.Rd
clusterpathRcpp/man/assign.labels.Rd
clusterpathRcpp/man/plot.l2.Rd
clusterpathRcpp/src
clusterpathRcpp/src/l2.cpp
clusterpathRcpp/src/Makevars
clusterpathRcpp/src/l2.h
clusterpathRcpp/src/l1.h
clusterpathRcpp/src/Makevars.win
clusterpathRcpp/src/l1.cpp
clusterpathRcpp/src/interface.cpp
clusterpathRcpp/NEWS