deSolve: Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')

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Functions that solve initial value problems of a system of first-order ordinary differential equations ('ODE'), of partial differential equations ('PDE'), of differential algebraic equations ('DAE'), and of delay differential equations. The functions provide an interface to the FORTRAN functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK' collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk' and a C-implementation of solvers of the 'Runge-Kutta' family with fixed or variable time steps. The package contains routines designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D partial differential equations ('PDE') that have been converted to 'ODEs' by numerical differencing.

Author
Karline Soetaert [aut], Thomas Petzoldt [aut, cre], R. Woodrow Setzer [aut], odepack authors [cph]
Date of publication
2016-09-12 18:32:57
Maintainer
Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
License
GPL (>= 2)
Version
1.15
URLs

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Man pages

aquaphy
A Physiological Model of Unbalanced Algal Growth
ccl4data
Closed Chamber Study of CCl4 Metabolism by Rats.
ccl4model
The CCl4 Inhalation Model
cleanEventTimes
Find Nearest Event for Each Time Step and Clean Time Steps to...
daspk
Solver for Differential Algebraic Equations (DAE)
dede
General Solver for Delay Differential Equations.
deSolve
General Solvers for Initial Value Problems of Ordinary...
deSolve-internal
Internal deSolve Functions
diagnostics
Print Diagnostic Characteristics of Solvers
diagnostics.deSolve
Print Diagnostic Characteristics of ODE and DAE Solvers
DLLfunc
Evaluates a Derivative Function Represented in a DLL
DLLres
Evaluates a Residual Derivative Function Represented in a DLL
events
Implementing Events and Roots in Differential Equation...
forcings
Passing Forcing Functions to Models Written in R or Compiled...
lsoda
Solver for Ordinary Differential Equations (ODE), Switching...
lsodar
Solver for Ordinary Differential Equations (ODE), Switching...
lsode
Solver for Ordinary Differential Equations (ODE)
lsodes
Solver for Ordinary Differential Equations (ODE) With Sparse...
ode
General Solver for Ordinary Differential Equations
ode.1D
Solver For Multicomponent 1-D Ordinary Differential Equations
ode.2D
Solver for 2-Dimensional Ordinary Differential Equations
ode.3D
Solver for 3-Dimensional Ordinary Differential Equations
ode.band
Solver for Ordinary Differential Equations; Assumes a Banded...
plot.deSolve
Plot, Image and Histogram Method for deSolve Objects
radau
Implicit Runge-Kutta RADAU IIA
rk
Explicit One-Step Solvers for Ordinary Differential Equations...
rk4
Solve System of ODE (Ordinary Differential Equation)s by...
rkMethod
Collection of Parameter Sets (Butcher Arrays) for the...
SCOC
A Sediment Model of Oxygen Consumption
timelags
Time Lagged Values of State Variables and Derivatives.
vode
Solver for Ordinary Differential Equations (ODE)
zvode
Solver for Ordinary Differential Equations (ODE) for COMPLEX...

Files in this package

deSolve/.Rinstignore
deSolve/DESCRIPTION
deSolve/NAMESPACE
deSolve/NEWS
deSolve/R
deSolve/R/Aquaphy.R
deSolve/R/DLLfunc.R
deSolve/R/SCOC.R
deSolve/R/Utilities.R
deSolve/R/ccl4model.R
deSolve/R/checkevents.R
deSolve/R/cleanEventTimes.R
deSolve/R/daspk.R
deSolve/R/dede.R
deSolve/R/diagnostics.R
deSolve/R/euler.R
deSolve/R/forcings.R
deSolve/R/functions.R
deSolve/R/iteration.R
deSolve/R/lsoda.R
deSolve/R/lsodar.R
deSolve/R/lsode.R
deSolve/R/lsodes.R
deSolve/R/matplot.R
deSolve/R/ode.R
deSolve/R/printmessage.R
deSolve/R/radau.R
deSolve/R/rk.R
deSolve/R/rk4.R
deSolve/R/rkMethod.R
deSolve/R/vode.R
deSolve/R/zvode.R
deSolve/build
deSolve/build/vignette.rds
deSolve/data
deSolve/data/ccl4data.rda
deSolve/demo
deSolve/demo/00Index
deSolve/demo/CCL4model.R
deSolve/demo/odedim.R
deSolve/inst
deSolve/inst/CITATION
deSolve/inst/doc
deSolve/inst/doc/compiledCode.R
deSolve/inst/doc/compiledCode.Rnw
deSolve/inst/doc/compiledCode.pdf
deSolve/inst/doc/deSolve.R
deSolve/inst/doc/deSolve.Rnw
deSolve/inst/doc/deSolve.pdf
deSolve/inst/doc/dynload
deSolve/inst/doc/dynload-dede
deSolve/inst/doc/dynload-dede/dedeUtils.c
deSolve/inst/doc/dynload-dede/dede_lv.R
deSolve/inst/doc/dynload-dede/dede_lv.c
deSolve/inst/doc/dynload-dede/dede_lv2.R
deSolve/inst/doc/dynload-dede/dede_lv2.c
deSolve/inst/doc/dynload-dede/dede_lv2F.f
deSolve/inst/doc/dynload-dede/dede_lvF.f
deSolve/inst/doc/dynload-dede/dedesimple.R
deSolve/inst/doc/dynload-dede/dedesimple.c
deSolve/inst/doc/dynload-dede/dedesimpleF.f
deSolve/inst/doc/dynload/Aquaphy.f
deSolve/inst/doc/dynload/AquaphyEvent.R
deSolve/inst/doc/dynload/AquaphyForcing.R
deSolve/inst/doc/dynload/AquaphyForcing.f
deSolve/inst/doc/dynload/CCL4model.f
deSolve/inst/doc/dynload/ChemicalDAE.f
deSolve/inst/doc/dynload/Forcing_lv.R
deSolve/inst/doc/dynload/Forcing_lv.c
deSolve/inst/doc/dynload/SCOC.f
deSolve/inst/doc/dynload/daspkdll.R
deSolve/inst/doc/dynload/daspkfor.f
deSolve/inst/doc/dynload/ex_Aquaphy.c
deSolve/inst/doc/dynload/ex_Aquaphy.f
deSolve/inst/doc/dynload/ex_CCL4model.c
deSolve/inst/doc/dynload/ex_CCL4model.f
deSolve/inst/doc/dynload/ex_SCOC.c
deSolve/inst/doc/dynload/ex_SCOC.f
deSolve/inst/doc/dynload/intakes.RData
deSolve/inst/doc/dynload/lsodardll.R
deSolve/inst/doc/dynload/lsodarfor.f
deSolve/inst/doc/dynload/odeband.R
deSolve/inst/doc/dynload/odeband.f
deSolve/inst/doc/dynload/odec.c
deSolve/inst/doc/dynload/odedll.R
deSolve/inst/doc/dynload/odefor.f
deSolve/inst/doc/dynload/odefor2.f
deSolve/inst/doc/dynload/radaudae.f
deSolve/inst/doc/dynload/radaudaedll.R
deSolve/inst/doc/dynload/satres.R
deSolve/inst/doc/dynload/satres.f
deSolve/inst/doc/dynload/satresC.c
deSolve/inst/doc/dynload/zvodedll.R
deSolve/inst/doc/dynload/zvodedll.f
deSolve/inst/doc/examples
deSolve/inst/doc/examples/Arenstorf.R
deSolve/inst/doc/examples/Daphnia_event.R
deSolve/inst/doc/examples/Nand.R
deSolve/inst/doc/examples/Pollution.R
deSolve/inst/doc/examples/Schelde_DSA.R
deSolve/inst/doc/examples/Schelde_FKA.R
deSolve/inst/doc/examples/Schelde_FNA.R
deSolve/inst/doc/examples/Schelde_OSA.R
deSolve/inst/doc/examples/Schelde_pars.R
deSolve/inst/doc/examples/ballode.R
deSolve/inst/doc/examples/examples_paper.R
deSolve/inst/doc/mymod.c
deSolve/inst/doc/mymod.f
deSolve/inst/doc/source
deSolve/inst/doc/source/ddaspkcomments.txt.gz
deSolve/inst/doc/source/opkdmain.f.gz
deSolve/inst/doc/source/opkdmaincomments.txt.gz
deSolve/inst/doc/source/vodecomments.txt.gz
deSolve/man
deSolve/man/DLLfunc.Rd
deSolve/man/DLLres.Rd
deSolve/man/SCOC.Rd
deSolve/man/aquaphy.Rd
deSolve/man/ccl4data.Rd
deSolve/man/ccl4model.Rd
deSolve/man/cleanEventTimes.Rd
deSolve/man/daspk.Rd
deSolve/man/deSolve-internal.Rd
deSolve/man/deSolve.Rd
deSolve/man/dede.Rd
deSolve/man/diagnostics.Rd
deSolve/man/diagnostics.deSolve.Rd
deSolve/man/events.Rd
deSolve/man/forcings.Rd
deSolve/man/lsoda.Rd
deSolve/man/lsodar.Rd
deSolve/man/lsode.Rd
deSolve/man/lsodes.Rd
deSolve/man/ode.1D.Rd
deSolve/man/ode.2D.Rd
deSolve/man/ode.3D.Rd
deSolve/man/ode.Rd
deSolve/man/ode.band.Rd
deSolve/man/plot.deSolve.Rd
deSolve/man/radau.Rd
deSolve/man/rk.Rd
deSolve/man/rk4.Rd
deSolve/man/rkMethod.Rd
deSolve/man/timelags.Rd
deSolve/man/vode.Rd
deSolve/man/zvode.Rd
deSolve/src
deSolve/src/DLLutil.c
deSolve/src/Makevars
deSolve/src/R_init_deSolve.c
deSolve/src/brent.c
deSolve/src/call_daspk.c
deSolve/src/call_euler.c
deSolve/src/call_iteration.c
deSolve/src/call_lsoda.c
deSolve/src/call_radau.c
deSolve/src/call_rk4.c
deSolve/src/call_rkAuto.c
deSolve/src/call_rkFixed.c
deSolve/src/call_rkImplicit.c
deSolve/src/call_zvode.c
deSolve/src/daux.f
deSolve/src/ddaspk.f
deSolve/src/deSolve.h
deSolve/src/deSolve_utils.c
deSolve/src/dintdy2.f
deSolve/src/dlinpk.f
deSolve/src/dlsoder.f
deSolve/src/dsparsk.f
deSolve/src/dvode.f
deSolve/src/errmsg.f
deSolve/src/ex_Aquaphy.c
deSolve/src/ex_CCL4model.c
deSolve/src/ex_ChemicalDAE.c
deSolve/src/ex_SCOC.c
deSolve/src/externalptr.h
deSolve/src/forcings.c
deSolve/src/lags.c
deSolve/src/opkda1.f
deSolve/src/opkdmain.f
deSolve/src/radau5.f
deSolve/src/radau5a.f
deSolve/src/rk_auto.c
deSolve/src/rk_fixed.c
deSolve/src/rk_implicit.c
deSolve/src/rk_util.c
deSolve/src/rk_util.h
deSolve/src/rprintf.c
deSolve/src/twoDmap.c
deSolve/src/zvode.f
deSolve/src/zvode.h
deSolve/vignettes
deSolve/vignettes/.install_extras
deSolve/vignettes/aphid.png
deSolve/vignettes/comp-event.pdf
deSolve/vignettes/compiledCode.Rnw
deSolve/vignettes/deSolve.Rnw
deSolve/vignettes/image1D.png
deSolve/vignettes/integration.bib
deSolve/vignettes/mymod.c
deSolve/vignettes/mymod.f