diseasemapping: Modelling Spatial Variation in Disease Risk for Areal Data

Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.

AuthorPatrick Brown <patrick.brown@utoronto.ca>, Lutong Zhou
Date of publication2016-11-16 16:44:26
MaintainerPatrick Brown <patrick.brown@utoronto.ca>
LicenseGPL
Version1.4.3

View on R-Forge

Functions

bym Man page
bym,formula,ANY,ANY,missing-method Man page
bym,formula,ANY,missing,missing-method Man page
bym,formula,data.frame,nb,character-method Man page
bym,formula,SpatialPolygonsDataFrame,missing,character-method Man page
bym,formula,SpatialPolygonsDataFrame,nb,character-method Man page
bym,formula,SpatialPolygonsDataFrame,NULL,character-method Man page
bym-methods Man page
cancerRates Man page
casedata Man page
diseasemapping Man page
diseasemapping-package Man page
formatCases Man page
formatPopulation Man page
formatPopulation,data.frame-method Man page
formatPopulation,list-method Man page
formatPopulation-methods Man page
formatPopulation,SpatialPolygonsDataFrame-method Man page
getBreaks Man page
getRates Man page
getSMR Man page
getSMR,data.frame,ANY,data.frame,character,character-method Man page
getSMR,data.frame,ANY,data.frame,character,missing-method Man page
getSMR,data.frame,ANY,data.frame,missing,missing-method Man page
getSMR,data.frame,ANY,missing,character,missing-method Man page
getSMR,data.frame,ANY,missing,missing,missing-method Man page
getSMR,list,ANY,ANY,ANY,ANY-method Man page
getSMR-methods Man page
getSMR,SpatialPolygonsDataFrame,ANY,ANY,ANY,ANY-method Man page
getStdRate Man page
inla.models Man page
kentucky Man page
kentuckyTract Man page
larynx Man page
larynxRates Man page
nbToInlaGraph Man page
popdata Man page
referencepop Man page

Files

diseasemapping/DESCRIPTION
diseasemapping/NAMESPACE
diseasemapping/R
diseasemapping/R/bym.R diseasemapping/R/cancer-rates.info.R diseasemapping/R/cancerRates.R
diseasemapping/R/computeArea.r
diseasemapping/R/expandCensus.r
diseasemapping/R/forInla.R diseasemapping/R/formatCases.R diseasemapping/R/formatPopulation.R diseasemapping/R/getBreaks.R diseasemapping/R/getExpected.R diseasemapping/R/getRates.R diseasemapping/R/getSMR.R diseasemapping/R/getStdRate.R
diseasemapping/build
diseasemapping/build/vignette.rds
diseasemapping/data
diseasemapping/data/casedata.RData
diseasemapping/data/datalist
diseasemapping/data/kentucky.RData
diseasemapping/data/kentuckyTract.RData
diseasemapping/data/popdata.RData
diseasemapping/data/referencepop.RData
diseasemapping/inst
diseasemapping/inst/CITATION
diseasemapping/inst/doc
diseasemapping/inst/doc/bym.Rnw
diseasemapping/inst/doc/bym.pdf
diseasemapping/man
diseasemapping/man/bym.Rd diseasemapping/man/cancerRates.Rd diseasemapping/man/casedata.Rd diseasemapping/man/diseasemapping-package.Rd diseasemapping/man/formatCases.Rd diseasemapping/man/formatPopulation.Rd diseasemapping/man/getBreaks.Rd diseasemapping/man/getRates.Rd diseasemapping/man/getSMR.Rd diseasemapping/man/getStdRate.Rd diseasemapping/man/inla.models.Rd diseasemapping/man/kentucky.Rd diseasemapping/man/nbInlaToGraph.Rd diseasemapping/man/popdata.Rd diseasemapping/man/referencepop.Rd
diseasemapping/tests
diseasemapping/tests/bym.R
diseasemapping/tests/cancerRates.R
diseasemapping/tests/getRates.R
diseasemapping/tests/getSMR.R
diseasemapping/vignettes
diseasemapping/vignettes/Makefile
diseasemapping/vignettes/bym.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.