diseasemapping: Modelling Spatial Variation in Disease Risk for Areal Data

Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.

Author
Patrick Brown <patrick.brown@utoronto.ca>, Lutong Zhou
Date of publication
2016-11-16 16:44:26
Maintainer
Patrick Brown <patrick.brown@utoronto.ca>
License
GPL
Version
1.4.3

View on R-Forge

Man pages

bym
Fit the BYM model
cancerRates
Download cancer incidence rates from the International Agency...
casedata
Data set contains the number of cases information
diseasemapping-package
Disease Mapping
formatCases
Format the disease case data set
formatPopulation
Format a population data set
getBreaks
Age Breaks
getRates
Calculate the estimated coefficients of age and sex group...
getSMR
Calculate the standardized mortality/morbidity ratios
getStdRate
Calculate the standardized rate
inla.models
Valid models in INLA
kentucky
Larynx cancer cases and population in Kentucky
nbInlaToGraph
Write a graph file for INLA
popdata
Ontario 2006 population by census subdivision
referencepop
Standard Canadian population data set from year 1991.

Files in this package

diseasemapping/DESCRIPTION
diseasemapping/NAMESPACE
diseasemapping/R
diseasemapping/R/bym.R
diseasemapping/R/cancer-rates.info.R
diseasemapping/R/cancerRates.R
diseasemapping/R/computeArea.r
diseasemapping/R/expandCensus.r
diseasemapping/R/forInla.R
diseasemapping/R/formatCases.R
diseasemapping/R/formatPopulation.R
diseasemapping/R/getBreaks.R
diseasemapping/R/getExpected.R
diseasemapping/R/getRates.R
diseasemapping/R/getSMR.R
diseasemapping/R/getStdRate.R
diseasemapping/build
diseasemapping/build/vignette.rds
diseasemapping/data
diseasemapping/data/casedata.RData
diseasemapping/data/datalist
diseasemapping/data/kentucky.RData
diseasemapping/data/kentuckyTract.RData
diseasemapping/data/popdata.RData
diseasemapping/data/referencepop.RData
diseasemapping/inst
diseasemapping/inst/CITATION
diseasemapping/inst/doc
diseasemapping/inst/doc/bym.Rnw
diseasemapping/inst/doc/bym.pdf
diseasemapping/man
diseasemapping/man/bym.Rd
diseasemapping/man/cancerRates.Rd
diseasemapping/man/casedata.Rd
diseasemapping/man/diseasemapping-package.Rd
diseasemapping/man/formatCases.Rd
diseasemapping/man/formatPopulation.Rd
diseasemapping/man/getBreaks.Rd
diseasemapping/man/getRates.Rd
diseasemapping/man/getSMR.Rd
diseasemapping/man/getStdRate.Rd
diseasemapping/man/inla.models.Rd
diseasemapping/man/kentucky.Rd
diseasemapping/man/nbInlaToGraph.Rd
diseasemapping/man/popdata.Rd
diseasemapping/man/referencepop.Rd
diseasemapping/tests
diseasemapping/tests/bym.R
diseasemapping/tests/cancerRates.R
diseasemapping/tests/getRates.R
diseasemapping/tests/getSMR.R
diseasemapping/vignettes
diseasemapping/vignettes/Makefile
diseasemapping/vignettes/bym.Rnw