downscale: Downscaling Species Occupancy

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A set of functions that downscales species occupancy at coarse grain sizes to predict species occupancy at fine grain sizes.

Author
Charles Marsh [aut, cre]
Date of publication
2016-11-24 15:06:52
Maintainer
Charles Marsh <charliem2003@gmail.com>
License
GPL-2
Version
1.2-4

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Man pages

downscale
Model area of occupancy against grain size for downscaling
Downscale-package
Downscaling Species Occupancy
ensemble.downscale
Ensemble modelling of multiple downscaling functions
hui.downscale
Predict occupancy at fine grain sizes using the Hui model
plot.predict.downscale
Plotting of downscaled occupancy at fine grain sizes
predict.downscale
Predict occupancy at fine grain sizes
upgrain
Upgraining of atlas data to larger grain sizes
upgrain.threshold
Exploration of trade-offs in threshold selection for...

Files in this package

downscale/DESCRIPTION
downscale/NAMESPACE
downscale/NEWS
downscale/R
downscale/R/DataInput.R
downscale/R/HuiFunctions.R
downscale/R/OptimiseParameters.R
downscale/R/OptimiseParametersFNB.R
downscale/R/OptimiseParametersGNB.R
downscale/R/OptimiseParametersLogis.R
downscale/R/OptimiseParametersThomas.R
downscale/R/PredictFunctions.R
downscale/R/ResidFunctions.R
downscale/R/StartingParams.R
downscale/R/ThomasFunctions.R
downscale/R/downscale.R
downscale/R/ensemble.downscale.R
downscale/R/hui.downscale.R
downscale/R/plot.predict.downscale.R
downscale/R/predict.downscale.R
downscale/R/upgrain.R
downscale/R/upgrain.threshold.R
downscale/build
downscale/build/vignette.rds
downscale/inst
downscale/inst/doc
downscale/inst/doc/Downscaling.R
downscale/inst/doc/Downscaling.Rnw
downscale/inst/doc/Downscaling.pdf
downscale/inst/doc/Upgraining.R
downscale/inst/doc/Upgraining.Rnw
downscale/inst/doc/Upgraining.pdf
downscale/inst/extdata
downscale/inst/extdata/UK.cpg
downscale/inst/extdata/UK.dbf
downscale/inst/extdata/UK.prj
downscale/inst/extdata/UK.sbn
downscale/inst/extdata/UK.sbx
downscale/inst/extdata/UK.shp
downscale/inst/extdata/UK.shx
downscale/inst/extdata/atlas_data.txt
downscale/man
downscale/man/Downscale-package.Rd
downscale/man/downscale.Rd
downscale/man/ensemble.downscale.Rd
downscale/man/figures
downscale/man/figures/Equations.png
downscale/man/figures/Flow.png
downscale/man/figures/Maps.png
downscale/man/figures/Original.png
downscale/man/figures/Params.png
downscale/man/figures/Threshold.png
downscale/man/figures/Thumbs.db
downscale/man/hui.downscale.Rd
downscale/man/plot.predict.downscale.Rd
downscale/man/predict.downscale.Rd
downscale/man/upgrain.Rd
downscale/man/upgrain.threshold.Rd
downscale/vignettes
downscale/vignettes/Downscaling-downscale.pdf
downscale/vignettes/Downscaling-downscale.png
downscale/vignettes/Downscaling-downscale11.pdf
downscale/vignettes/Downscaling-downscale11.png
downscale/vignettes/Downscaling-downscale13.pdf
downscale/vignettes/Downscaling-downscale14.pdf
downscale/vignettes/Downscaling-downscale14.png
downscale/vignettes/Downscaling-downscale16.pdf
downscale/vignettes/Downscaling-downscale16.png
downscale/vignettes/Downscaling-downscale18.pdf
downscale/vignettes/Downscaling-downscale18.png
downscale/vignettes/Downscaling-downscale19.pdf
downscale/vignettes/Downscaling-downscale19.png
downscale/vignettes/Downscaling-downscale22.pdf
downscale/vignettes/Downscaling-downscale22.png
downscale/vignettes/Downscaling-downscale23.pdf
downscale/vignettes/Downscaling-downscale23.png
downscale/vignettes/Downscaling-downscale24.pdf
downscale/vignettes/Downscaling-downscale24.png
downscale/vignettes/Downscaling-downscale26.pdf
downscale/vignettes/Downscaling-downscale26.png
downscale/vignettes/Downscaling-downscale30.png
downscale/vignettes/Downscaling-downscale32.png
downscale/vignettes/Downscaling-downscale33.png
downscale/vignettes/Downscaling-downscale34.png
downscale/vignettes/Downscaling-downscale36.png
downscale/vignettes/Downscaling-downscale38.png
downscale/vignettes/Downscaling-downscale40.png
downscale/vignettes/Downscaling-downscale41.png
downscale/vignettes/Downscaling-downscale42.png
downscale/vignettes/Downscaling-downscale6.pdf
downscale/vignettes/Downscaling-downscale6.png
downscale/vignettes/Downscaling-upgrain.downscale.pdf
downscale/vignettes/Downscaling-upgrain.downscale.png
downscale/vignettes/Downscaling.Rnw
downscale/vignettes/Thumbs.db
downscale/vignettes/Upgraining-upgrain.downscale.pdf
downscale/vignettes/Upgraining-upgrain.downscale.png
downscale/vignettes/Upgraining.Rnw
downscale/vignettes/figures
downscale/vignettes/figures/All_interior.png
downscale/vignettes/figures/Flow.png
downscale/vignettes/figures/Interior_only.png
downscale/vignettes/figures/Original_upgrain.png
downscale/vignettes/figures/Saturation.png
downscale/vignettes/figures/Threshold_maps.png
downscale/vignettes/figures/Threshold_maps_2_scales.png
downscale/vignettes/figures/Threshold_maps_4_scales.png
downscale/vignettes/figures/Threshold_plots.png
downscale/vignettes/figures/Thumbs.db