downscale: Downscaling Species Occupancy
Version 1.2-4

A set of functions that downscales species occupancy at coarse grain sizes to predict species occupancy at fine grain sizes.

Browse man pages Browse package API and functions Browse package files

AuthorCharles Marsh [aut, cre]
Date of publication2016-11-24 15:06:52
MaintainerCharles Marsh <charliem2003@gmail.com>
LicenseGPL-2
Version1.2-4
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("downscale", repos="http://R-Forge.R-project.org")

Man pages

downscale: Model area of occupancy against grain size for downscaling
Downscale-package: Downscaling Species Occupancy
ensemble.downscale: Ensemble modelling of multiple downscaling functions
hui.downscale: Predict occupancy at fine grain sizes using the Hui model
plot.predict.downscale: Plotting of downscaled occupancy at fine grain sizes
predict.downscale: Predict occupancy at fine grain sizes
upgrain: Upgraining of atlas data to larger grain sizes
upgrain.threshold: Exploration of trade-offs in threshold selection for...

Functions

DataInput Source code
OptimiseParameters Source code
OptimiseParametersFNB Source code
OptimiseParametersGNB Source code
OptimiseParametersLogis Source code
OptimiseParametersThomas Source code
PredictFNB Source code
PredictGNB Source code
PredictINB Source code
PredictLogis Source code
PredictNB Source code
PredictNachman Source code
PredictPL Source code
PredictPoisson Source code
PredictThomas Source code
ResidFNB Source code
ResidGNB Source code
ResidHui Source code
ResidINB Source code
ResidLogis Source code
ResidNB Source code
ResidNachman Source code
ResidPL Source code
ResidPoisson Source code
ResidThomas Source code
downscale Man page Source code
downscale-package Man page
ensemble.downscale Man page Source code
erf Source code
espA Source code
hui.downscale Man page Source code
isonormdist Source code
plot.predict.downscale Man page Source code
predict.downscale Man page Source code
prob_absence Source code
prob_q11 Source code
upgrain Man page Source code
upgrain.threshold Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/DataInput.R
R/HuiFunctions.R
R/OptimiseParameters.R
R/OptimiseParametersFNB.R
R/OptimiseParametersGNB.R
R/OptimiseParametersLogis.R
R/OptimiseParametersThomas.R
R/PredictFunctions.R
R/ResidFunctions.R
R/StartingParams.R
R/ThomasFunctions.R
R/downscale.R
R/ensemble.downscale.R
R/hui.downscale.R
R/plot.predict.downscale.R
R/predict.downscale.R
R/upgrain.R
R/upgrain.threshold.R
build
build/vignette.rds
inst
inst/doc
inst/doc/Downscaling.R
inst/doc/Downscaling.Rnw
inst/doc/Downscaling.pdf
inst/doc/Upgraining.R
inst/doc/Upgraining.Rnw
inst/doc/Upgraining.pdf
inst/extdata
inst/extdata/UK.cpg
inst/extdata/UK.dbf
inst/extdata/UK.prj
inst/extdata/UK.sbn
inst/extdata/UK.sbx
inst/extdata/UK.shp
inst/extdata/UK.shx
inst/extdata/atlas_data.txt
man
man/Downscale-package.Rd
man/downscale.Rd
man/ensemble.downscale.Rd
man/figures
man/figures/Equations.png
man/figures/Flow.png
man/figures/Maps.png
man/figures/Original.png
man/figures/Params.png
man/figures/Threshold.png
man/figures/Thumbs.db
man/hui.downscale.Rd
man/plot.predict.downscale.Rd
man/predict.downscale.Rd
man/upgrain.Rd
man/upgrain.threshold.Rd
vignettes
vignettes/Downscaling-downscale.pdf
vignettes/Downscaling-downscale.png
vignettes/Downscaling-downscale11.pdf
vignettes/Downscaling-downscale11.png
vignettes/Downscaling-downscale13.pdf
vignettes/Downscaling-downscale14.pdf
vignettes/Downscaling-downscale14.png
vignettes/Downscaling-downscale16.pdf
vignettes/Downscaling-downscale16.png
vignettes/Downscaling-downscale18.pdf
vignettes/Downscaling-downscale18.png
vignettes/Downscaling-downscale19.pdf
vignettes/Downscaling-downscale19.png
vignettes/Downscaling-downscale22.pdf
vignettes/Downscaling-downscale22.png
vignettes/Downscaling-downscale23.pdf
vignettes/Downscaling-downscale23.png
vignettes/Downscaling-downscale24.pdf
vignettes/Downscaling-downscale24.png
vignettes/Downscaling-downscale26.pdf
vignettes/Downscaling-downscale26.png
vignettes/Downscaling-downscale30.png
vignettes/Downscaling-downscale32.png
vignettes/Downscaling-downscale33.png
vignettes/Downscaling-downscale34.png
vignettes/Downscaling-downscale36.png
vignettes/Downscaling-downscale38.png
vignettes/Downscaling-downscale40.png
vignettes/Downscaling-downscale41.png
vignettes/Downscaling-downscale42.png
vignettes/Downscaling-downscale6.pdf
vignettes/Downscaling-downscale6.png
vignettes/Downscaling-upgrain.downscale.pdf
vignettes/Downscaling-upgrain.downscale.png
vignettes/Downscaling.Rnw
vignettes/Thumbs.db
vignettes/Upgraining-upgrain.downscale.pdf
vignettes/Upgraining-upgrain.downscale.png
vignettes/Upgraining.Rnw
vignettes/figures
vignettes/figures/All_interior.png
vignettes/figures/Flow.png
vignettes/figures/Interior_only.png
vignettes/figures/Original_upgrain.png
vignettes/figures/Saturation.png
vignettes/figures/Threshold_maps.png
vignettes/figures/Threshold_maps_2_scales.png
vignettes/figures/Threshold_maps_4_scales.png
vignettes/figures/Threshold_plots.png
vignettes/figures/Thumbs.db
downscale documentation built on May 21, 2017, 1:37 a.m.