dpeaqms: Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)

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Provides tools for differential protein expression analyses from mass spectrometric analyses of isobaric labeled protein samples, using a Bayesian statistical approach.

Author
Howsun Jow <Howsun.Jow@ncl.ac.uk>
Date of publication
2014-04-13 18:21:38
Maintainer
Howsun Jow <Howsun.Jow@ncl.ac.uk>
License
LGPL
Version
0.5

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Man pages

dpeaqms.csv2msms
Converts a csv style file into an MSMS data frame that can be...
dpeaqms.extract.sample
Extract samples from the output of dpeaqms
dpeaqms.mcmc
dpeaqms MCMC Sampling function
dpeaqms.model
Differential Protein Expression Model
dpeaqms.simulatedDataset1
Simulated MS/MS dataset

Files in this package

dpeaqms/DESCRIPTION
dpeaqms/NAMESPACE
dpeaqms/R
dpeaqms/R/dpeaqms.csv2msms.r
dpeaqms/R/dpeaqms.extract.sample.r
dpeaqms/R/dpeaqms.mcmc.r
dpeaqms/build
dpeaqms/build/vignette.rds
dpeaqms/data
dpeaqms/data/datalist
dpeaqms/data/dpeaqms.model.rda
dpeaqms/data/dpeaqms.simulatedDataset1.tab.gz
dpeaqms/inst
dpeaqms/inst/doc
dpeaqms/inst/doc/dpeaqms.Snw
dpeaqms/inst/doc/dpeaqms.pdf
dpeaqms/inst/doc/dpeaqms.simulatedDataset.Snw
dpeaqms/inst/doc/dpeaqms.simulatedDataset.pdf
dpeaqms/man
dpeaqms/man/dpeaqms.csv2msms.Rd
dpeaqms/man/dpeaqms.extract.sample.Rd
dpeaqms/man/dpeaqms.mcmc.Rd
dpeaqms/man/dpeaqms.model.Rd
dpeaqms/man/dpeaqms.simulatedDataset1.Rd
dpeaqms/vignettes
dpeaqms/vignettes/dpeaqms.Snw
dpeaqms/vignettes/dpeaqms.simulatedDataset.Snw