dream: DiffeRential Evolution Adaptive Metropolis

Efficient global MCMC even in high-dimensional spaces. Based on the original MATLAB code written by Jasper Vrugt. Methods for calibration and prediction using the DREAM algorithm

Author
Jasper Vrugt [aut] (Matlab original), Joseph Guillaume [aut, cre] (R implementation and added functionality), Felix Andrews [aut] (R implementation and added functionality)
Date of publication
2016-03-16 11:05:22
Maintainer
Joseph Guillaume <joseph.guillaume@anu.edu.au>
License
bsd
Version
0.4-2
URLs

View on R-Forge

Man pages

coef.dream
Extract parameter values from dream or dream_model object
compareToMatlab
Compare dream and matlab results
CovInit
Alternative sampling method...
dream
DiffeRential Evolution Adaptive Metropolis (DREAM)
dreamCalibrate
Utility to calibrate a function using dream
getMatlabControl
Get dream control settings from matlab .mat file
getMatlabSeq
Get dream chains from matlab .mat file
LHSInit
Latin Hypercube sampling...
likelihood_functions
Likelihood functions
plot.dream
Visualising DREAM results
plotMCMCQQ
QQ plot of MCMC chains
predict.dream
Predict values using dream_model object
simulate.dream
Simulate values from a distribution using converged MCMC...
snow.chains
DREAM with external batch files in parallel folders
window.dream
Extract MCMC chains from a DREAM object
writeMatlabDREAMSettings
Write settings for dream in matlab

Files in this package

dream/DESCRIPTION
dream/LICENSE
dream/NAMESPACE
dream/NEWS
dream/R
dream/R/ACR.R
dream/R/AdaptpCR.R
dream/R/CalcCbWb.R
dream/R/CalcDelta.R
dream/R/CompDensity.R
dream/R/CovInit.R
dream/R/DEStrategy.R
dream/R/GenCR.R
dream/R/LHSInit.R
dream/R/RemOutlierChains.R
dream/R/coef.dream.R
dream/R/compareToMatlab.R
dream/R/dream.R
dream/R/dreamCalibrate.R
dream/R/handleBounds.R
dream/R/maxLikCoda.R
dream/R/metrop.R
dream/R/offde.R
dream/R/plot.dream.R
dream/R/predict.dream.R
dream/R/print.dream.R
dream/R/rand_utils.R
dream/R/simulate.dream.R
dream/R/summary.dream.R
dream/R/window.dream.R
dream/demo
dream/demo/00Index
dream/demo/FME.nonlinear.model.R
dream/demo/FME.nonlinear.model_parallelisation.R
dream/demo/example1.R
dream/demo/example2.R
dream/demo/parallelisation_chain_id.R
dream/inst
dream/inst/CITATION
dream/man
dream/man/CovInit.Rd
dream/man/LHSInit.Rd
dream/man/coef.dream.Rd
dream/man/compareToMatlab.Rd
dream/man/dream.Rd
dream/man/dreamCalibrate.Rd
dream/man/getMatlabControl.Rd
dream/man/getMatlabSeq.Rd
dream/man/likelihood_functions.Rd
dream/man/plot.dream.Rd
dream/man/plotMCMCQQ.Rd
dream/man/predict.dream.Rd
dream/man/simulate.dream.Rd
dream/man/snow.chains.Rd
dream/man/window.dream.Rd
dream/man/writeMatlabDREAMSettings.Rd