epinetics: EpiNetics
Version 0.2

More about what it does (maybe more than one line)

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AuthorEamon O'Dea
Date of publicationNone
MaintainerEamon O'Dea <ebo@mail.utexas.edu>
LicenseGPL (>= 2)
Version0.2
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("epinetics", repos="http://R-Forge.R-project.org")

Getting started

Popular man pages

Man pages

Functions

E.v Source code
First.lib Source code
add.mutation.events Source code
ast.lib Source code
beta.from.T Source code
build.circulant Source code Source code
check.cov.mu Source code
cond.hist Source code
custplot Source code
degree.pgf Source code
dist.at.time Source code
epi.sim.ssa Source code
excess.sc.degree.pgf Source code
final.epi.size Source code
final.sc.epi.size Source code
full.sc.epi.size Source code
get.dist.vs.time.p Source code
get.exp.rand.net Source code
get.infection.tree Source code
get.phylo.network Source code
get.reg.rand.graph Source code
get.tau Source code
havel.hakimi Source code
ldist.at.time Source code
list.mean.dist Source code
list.mean.hist Source code
ll.crunch Source code
make.inf.tau.vec Source code
make.multi.time.series Source code
make.time.series Source code
make.var.in.mean.vs.t.df Source code
mean.dist.tau.df Source code
mean.sc.degree Source code
mutate.sequence Source code Source code
net.shuffle Source code
param.loop Source code
pext.by.sc Source code
rnbernexp Source code
sample.host.id.with.hist Source code
sample.sequences Source code
sc.dist Source code
sc.excess.degree.fixed.point Source code
seq.list.to.nexus Source code
sequence.bot Source code
sim.prob.epi.by.hist Source code
simulate.sequences Source code Source code
site.mutate Source code
ssa.epidemics.series Source code Source code
ssa.outbreaks.series Source code Source code
strain.degree.pgf Source code
strain.degree.pmf Source code
summarize.ll Source code
vert.status.plot Source code Source code

Files

NAMESPACE
R
R/epinetics-internal.R
R/summarize.ll.R
R/ts.stats.plotter.R
R/seq.list.to.nexus.R
R/sc.excess.degree.fixed.point.R
R/interp-funs.R
R/mean.outbreaks.series.R
R/net-shuffle.R
R/ldist.at.time.R
R/mean.dist.tau.df.R
R/add.mutation.events.R
R/get.tau.R
R/make.time.series.R
R/strain.degree.dist.R
R/get.t.crit.R
R/ll.crunch.R
R/get.exp.rand.net.R
R/degree.pgf.R
R/get.sim.size.at.tau.R
R/mean.epidemics.series.R
R/simulate.sequences.R
R/cond-hist.R
R/strain.degree.pmf.R
R/make.multi.time.series.R
R/full.sc.epi.size.R
R/simulate.epidemic.R
R/get.times.mutated.R
R/list.mean.hist.R
R/dist.at.time.R
R/check.cov.mu.R
R/infect.R
R/custplot.R
R/final.sc.epi.size.R
R/ssa.outbreaks.series.R
R/final.epi.size.R
R/cond.hist.max.R
R/sc.dist.R
R/vt.excess.degree.pgf.R
R/new.epi.env.R
R/site.mutate.R
R/recovery.R
R/zzz.R
R/sequence.mutate.R
R/strain.mutate.R
R/get.reg.rand.graph.R
R/mutate.sequence.R
R/net.simpsons.index.R
R/generate.sequences.R
R/excess.sc.degree.pgf.R
R/strain.degree.pgf.R
R/immunize.R
R/get.phylo.network.R
R/tau-functions.R
R/ssa.epidemics.series.R
R/cust3plot.R
R/cond.hist.mean.R
R/pext.by.sc.R
R/sequence.bot.R
R/make.var.in.mean.vs.t.df.R
R/mts.stats.R
R/vt.degree.pgf.R
R/sample.host.id.with.hist.R
R/list.mean.dist.R
R/get.sim.mean.dist.at.tau.R
R/sample.sequences.R
R/simulate.next.event.R
R/rnbernexp.R
R/excess.degree.pgf.R
R/cond.hist.var.R
R/get.mean.outbreak.R
R/param.loop.R
R/havel-hakimi.R
R/mean.sc.degree.R
R/epi.sim.ssa.R
R/build.circulant.R
R/get.p.dists.R
R/get.infection.tree.R
R/immunize.deg.dist.tail.R
R/vert.status.plot.R
R/sim.prob.epi.by.hist.R
DESCRIPTION
src
src/hashtable_utility.c
src/hashtable.h
src/networkapi.h
src/hashtable_utility.h
src/networkapi.c
src/simulator.c
src/utils.h
src/hashtable.c
src/epinetics_common.h
src/utils.c
src/hashtable_itr.h
src/hashtable_itr.c
src/hashtable_private.h
epinetics documentation built on May 21, 2017, 3:54 a.m.