epineticseq: EpiNeticSeq
Version 0.1

Simulate evolution of viral sequences alongth with population dynamics

AuthorEamon O'Dea
Date of publicationNone
MaintainerEamon O'Dea <ebo@mail.utexas.edu>
LicenseGPL (>= 2)
Version0.1
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("epineticseq", repos="http://R-Forge.R-project.org")

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Function index File listing

Functions

Files

NAMESPACE
R
R/epinetics-internal.R
R/summarize.ll.R
R/ts.stats.plotter.R
R/seq.list.to.nexus.R
R/sc.excess.degree.fixed.point.R
R/make.multi.phy.time.series.R
R/interp-funs.R
R/mean.outbreaks.series.R
R/net-shuffle.R
R/ldist.at.time.R
R/mean.dist.tau.df.R
R/add.mutation.events.R
R/get.tau.R
R/make.time.series.R
R/strain.degree.dist.R
R/get.t.crit.R
R/ll.crunch.R
R/get.exp.rand.net.R
R/degree.pgf.R
R/get.sim.size.at.tau.R
R/mean.epidemics.series.R
R/within.epi.sim.ssa.R
R/simulate.sequences.R
R/cond-hist.R
R/strain.degree.pmf.R
R/make.multi.time.series.R
R/full.sc.epi.size.R
R/simulate.epidemic.R
R/get.times.mutated.R
R/list.mean.hist.R
R/dist.at.time.R
R/check.cov.mu.R
R/infect.R
R/custplot.R
R/final.sc.epi.size.R
R/ssa.outbreaks.series.R
R/final.epi.size.R
R/cond.hist.max.R
R/sc.dist.R
R/vt.excess.degree.pgf.R
R/new.epi.env.R
R/site.mutate.R
R/recovery.R
R/zzz.R
R/sequence.mutate.R
R/strain.mutate.R
R/get.reg.rand.graph.R
R/mutate.sequence.R
R/net.simpsons.index.R
R/generate.sequences.R
R/excess.sc.degree.pgf.R
R/strain.degree.pgf.R
R/immunize.R
R/get.phylo.network.R
R/tau-functions.R
R/ssa.epidemics.series.R
R/cust3plot.R
R/cond.hist.mean.R
R/pext.by.sc.R
R/sequence.bot.R
R/make.var.in.mean.vs.t.df.R
R/mts.cruncher.R
R/within.param.loop.R
R/mts.stats.R
R/vt.degree.pgf.R
R/sample.host.id.with.hist.R
R/list.mean.dist.R
R/get.sim.mean.dist.at.tau.R
R/sample.sequences.R
R/simulate.next.event.R
R/rnbernexp.R
R/excess.degree.pgf.R
R/cond.hist.var.R
R/get.mean.outbreak.R
R/param.loop.R
R/havel-hakimi.R
R/mean.sc.degree.R
R/epi.sim.ssa.R
R/build.circulant.R
R/get.p.dists.R
R/get.infection.tree.R
R/make.phy.time.series.R
R/immunize.deg.dist.tail.R
R/vert.status.plot.R
R/sim.prob.epi.by.hist.R
DESCRIPTION
src
src/hashtable_utility.c
src/hashtable.h
src/networkapi.h
src/hashtable_utility.h
src/networkapi.c
src/simulator.c
src/utils.h
src/hashtable.c
src/epinetics_common.h
src/utils.c
src/hashtable_itr.h
src/hashtable_itr.c
src/hashtable_private.h
epineticseq documentation built on May 21, 2017, 12:54 a.m.

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