euroformix: Package for intepretation of quantitative DNA mixtures

euroformix contains procedures for maximization, integration and MCMC of likelihoods of a continuous model for replicated STR DNA mixtures for a general specifications of hypotheses. It also does deconvolution condition on the continuous model. The continuous model takes care of drop-out, drop-in, stutters and degradation. It also contains the graphical layer efm.

AuthorOyvind Bleka <Oyvind.Bleka@fhi.no>
Date of publication2015-10-19 08:09:36
MaintainerOyvind Bleka <Oyvind.Bleka@fhi.no>
LicenseGPL(>=2)
Version0.3.11

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Files

DESCRIPTION
NAMESPACE
R
R/Qassignate.R R/combineRank.R R/contLikINT.R R/contLikMCMC.R R/contLikMLE.R R/deconvolve.R R/efm.R R/exactMACdistr.R R/genDataset.R R/getGlist.R R/getKit.R R/iszerolik.R R/logLiki.R R/noncontrMLE.R R/plotEPG.R R/prepareC.R R/simDOdistr.R R/validMCMC.R R/validMLEmodel.R
inst
inst/CowellMC15Example.R
inst/extdata
inst/extdata/kit.txt
inst/mcData.Rdata
inst/packageExample.R
inst/tutorialdata
inst/tutorialdata/FreqDatabases
inst/tutorialdata/FreqDatabases/ESX17_Norway.csv
inst/tutorialdata/FreqDatabases/Identifiler_Caucasian.csv
inst/tutorialdata/FreqDatabases/Identifiler_NIST.csv
inst/tutorialdata/FreqDatabases/NGM_Holland.csv
inst/tutorialdata/FreqDatabases/SGMPlus_Norway.csv
inst/tutorialdata/FreqDatabases/SGMPlus_UK.csv
inst/tutorialdata/FreqDatabases/SGM_German.csv
inst/tutorialdata/databaseESX17.txt
inst/tutorialdata/refs.csv
inst/tutorialdata/stain.txt
man
man/Qassignate.Rd man/combineRank.Rd man/contLikINT.Rd man/contLikMCMC.Rd man/contLikMLE.Rd man/deconvolve.Rd man/efm.Rd man/exactMACdistr.Rd man/genDataset.Rd man/getGlist.Rd man/getKit.Rd man/iszerolik.Rd man/logLiki.Rd man/noncontrMLE.Rd man/plotEPG.Rd man/prepareC.Rd man/simDOdistr.Rd man/validMCMC.Rd man/validMLEmodel.Rd
src
src/Makevars
src/Makevars.win
src/loglikgamma.cpp

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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