fuzzySim: Fuzzy similarity in species distributions

Functions to calculate fuzzy versions of species' occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis and prevalence-independent favourability GLM), and pair-wise fuzzy similarity (based on fuzzy versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model comparison (overlap and fuzzy similarity, loss or gain), and for data preparation, such as obtaining unique abbreviations of species names, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, assessing the false discovery rate, or analysing and dealing with multicollinearity among variables. Includes also sample datasets for providing practical examples.

AuthorBarbosa A.M.
Date of publication2016-09-30 11:21:15
MaintainerA. Marcia Barbosa <barbosa@uevora.pt>
LicenseGPL-3
Version1.7.8

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Files in this package

fuzzySim/DESCRIPTION
fuzzySim/NAMESPACE
fuzzySim/NEWS
fuzzySim/R
fuzzySim/R/FDR.R fuzzySim/R/Fav.R fuzzySim/R/corSelect.R fuzzySim/R/distPres.R fuzzySim/R/fuzSim.R fuzzySim/R/fuzzyOverlay.R fuzzySim/R/fuzzyRangeChange.R fuzzySim/R/fuzzySim-internal.R fuzzySim/R/getPreds.R fuzzySim/R/integerCols.R fuzzySim/R/modOverlap.R fuzzySim/R/modelTrim.R fuzzySim/R/multConvert.R fuzzySim/R/multGLM.R fuzzySim/R/multTSA.R fuzzySim/R/multicol.R fuzzySim/R/onAttach.R fuzzySim/R/pairwiseRangemaps.R fuzzySim/R/percentTestData.R fuzzySim/R/rangemapSim.R fuzzySim/R/simFromSetOps.R fuzzySim/R/simMat.R fuzzySim/R/spCodes.R fuzzySim/R/splist2presabs.R fuzzySim/R/stepByStep.R fuzzySim/R/timer.R fuzzySim/R/transpose.R fuzzySim/R/triMatInd.R
fuzzySim/data
fuzzySim/data/rotif.env.rda
fuzzySim/data/rotifers.rda
fuzzySim/dummyfile
fuzzySim/man
fuzzySim/man/FDR.Rd fuzzySim/man/Fav.Rd fuzzySim/man/corSelect.Rd fuzzySim/man/distPres.Rd fuzzySim/man/fuzSim.Rd fuzzySim/man/fuzzyOverlay.Rd fuzzySim/man/fuzzyRangeChange.Rd fuzzySim/man/fuzzySim-package.Rd fuzzySim/man/getPreds.Rd fuzzySim/man/integerCols.Rd fuzzySim/man/modOverlap.Rd fuzzySim/man/modelTrim.Rd fuzzySim/man/multConvert.Rd fuzzySim/man/multGLM.Rd fuzzySim/man/multTSA.Rd fuzzySim/man/multicol.Rd fuzzySim/man/pairwiseRangemaps.Rd fuzzySim/man/percentTestData.Rd fuzzySim/man/rangemapSim.Rd fuzzySim/man/rotif.env.Rd fuzzySim/man/rotifers.Rd fuzzySim/man/simFromSetOps.Rd fuzzySim/man/simMat.Rd fuzzySim/man/spCodes.Rd fuzzySim/man/splist2presabs.Rd fuzzySim/man/stepByStep.Rd fuzzySim/man/timer.Rd fuzzySim/man/transpose.Rd fuzzySim/man/triMatInd.Rd

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