fuzzySim: Fuzzy similarity in species distributions

Functions to calculate fuzzy versions of species' occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis and prevalence-independent favourability GLM), and pair-wise fuzzy similarity (based on fuzzy versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model comparison (overlap and fuzzy similarity, loss or gain), and for data preparation, such as obtaining unique abbreviations of species names, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, assessing the false discovery rate, or analysing and dealing with multicollinearity among variables. Includes also sample datasets for providing practical examples.

AuthorBarbosa A.M.
Date of publication2016-09-30 11:21:15
MaintainerA. Marcia Barbosa <barbosa@uevora.pt>
LicenseGPL-3
Version1.7.8

View on R-Forge

Functions

corSelect Man page
distPres Man page
Fav Man page
FDR Man page
fuzSim Man page
fuzzyOverlay Man page
fuzzyRangeChange Man page
fuzzySim Man page
fuzzySim-package Man page
getPreds Man page
integerCols Man page
modelTrim Man page
modOverlap Man page
multConvert Man page
multGLM Man page
multicol Man page
multTSA Man page
pairwiseRangemaps Man page
percentTestData Man page
rangemapSim Man page
rotif.env Man page
rotifers Man page
simFromSetOps Man page
simMat Man page
spCodes Man page
splist2presabs Man page
stepByStep Man page
timer Man page
transpose Man page
triMatInd Man page

Files

fuzzySim/DESCRIPTION
fuzzySim/NAMESPACE
fuzzySim/NEWS
fuzzySim/R
fuzzySim/R/FDR.R fuzzySim/R/Fav.R fuzzySim/R/corSelect.R fuzzySim/R/distPres.R fuzzySim/R/fuzSim.R fuzzySim/R/fuzzyOverlay.R fuzzySim/R/fuzzyRangeChange.R fuzzySim/R/fuzzySim-internal.R fuzzySim/R/getPreds.R fuzzySim/R/integerCols.R fuzzySim/R/modOverlap.R fuzzySim/R/modelTrim.R fuzzySim/R/multConvert.R fuzzySim/R/multGLM.R fuzzySim/R/multTSA.R fuzzySim/R/multicol.R fuzzySim/R/onAttach.R fuzzySim/R/pairwiseRangemaps.R fuzzySim/R/percentTestData.R fuzzySim/R/rangemapSim.R fuzzySim/R/simFromSetOps.R fuzzySim/R/simMat.R fuzzySim/R/spCodes.R fuzzySim/R/splist2presabs.R fuzzySim/R/stepByStep.R fuzzySim/R/timer.R fuzzySim/R/transpose.R fuzzySim/R/triMatInd.R
fuzzySim/data
fuzzySim/data/rotif.env.rda
fuzzySim/data/rotifers.rda
fuzzySim/dummyfile
fuzzySim/man
fuzzySim/man/FDR.Rd fuzzySim/man/Fav.Rd fuzzySim/man/corSelect.Rd fuzzySim/man/distPres.Rd fuzzySim/man/fuzSim.Rd fuzzySim/man/fuzzyOverlay.Rd fuzzySim/man/fuzzyRangeChange.Rd fuzzySim/man/fuzzySim-package.Rd fuzzySim/man/getPreds.Rd fuzzySim/man/integerCols.Rd fuzzySim/man/modOverlap.Rd fuzzySim/man/modelTrim.Rd fuzzySim/man/multConvert.Rd fuzzySim/man/multGLM.Rd fuzzySim/man/multTSA.Rd fuzzySim/man/multicol.Rd fuzzySim/man/pairwiseRangemaps.Rd fuzzySim/man/percentTestData.Rd fuzzySim/man/rangemapSim.Rd fuzzySim/man/rotif.env.Rd fuzzySim/man/rotifers.Rd fuzzySim/man/simFromSetOps.Rd fuzzySim/man/simMat.Rd fuzzySim/man/spCodes.Rd fuzzySim/man/splist2presabs.Rd fuzzySim/man/stepByStep.Rd fuzzySim/man/timer.Rd fuzzySim/man/transpose.Rd fuzzySim/man/triMatInd.Rd

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