Files in gMCP
Graph Based Multiple Comparison Procedures
TODO
NEWS
.Rinstignore
DESCRIPTION
NAMESPACE
INSTALL
inst/References.html
inst/CITATION
inst/unitTests/runit.entangled.R
inst/unitTests/runit.correlation.R
inst/unitTests/runit.graphGMCP.R
inst/unitTests/runit.cover.everything.R
inst/unitTests/runit.adjPValues.R
inst/unitTests/runit.misc.R
inst/unitTests/runit.gMCP.R
inst/unitTests/runit.randomGraph.R
inst/unitTests/runit.LaTeX.R
inst/unitTests/runit.power.R
inst/unitTests/runit.fastgMCP.R
inst/doc/AQuickStart.Rnw
inst/doc/gMCP.pdf
inst/doc/AQuickStart.pdf
inst/doc/parametric.Rnw
inst/doc/parametric.pdf
inst/doc/gMCP.Rnw
inst/java/gsrmtp.jar
vignettes/AQuickStart.Rnw
vignettes/parametric.Rnw
vignettes/myIndex.ist
vignettes/literatur.bib
vignettes/gMCP.Rnw
vignettes/pictures/power.png
vignettes/pictures/Reset.png
vignettes/pictures/createCM1.png
vignettes/pictures/variableEditor.png
vignettes/pictures/zoom_out.png
vignettes/pictures/rjavaicon64.png
vignettes/pictures/adjPval.png
vignettes/pictures/StartTesting.png
vignettes/pictures/filemenu.png
vignettes/pictures/zoom_in.png
vignettes/pictures/confint2.png
vignettes/pictures/adjPval_b.png
vignettes/pictures/confint2_b.png
vignettes/pictures/docxExport.png
vignettes/pictures/GeneratedRCode.png
vignettes/pictures/example.png
vignettes/pictures/FullFeaturedGUI.png
vignettes/pictures/edge.png
vignettes/pictures/vertex.png
vignettes/pictures/correlated.png
vignettes/pictures/createCM3.png
vignettes/pictures/entangled.png
vignettes/pictures/CIDialog.png
R/misc.R
R/matrix2graph.R
R/analysis.R
R/startGUIs.R
R/rqmvnorm.R
R/generateWeights.R
R/powerPlot.R
R/modifyGraphs.R
R/graph2latex.R
R/gACT-internal.R
R/exampleGraphs.R
R/subVariables.R
R/plotCI.R
R/gPAD.R
R/helperGUI.R
R/generateTest.R
R/graphMCP.R
R/calcPower.R
R/gMCP.R
R/convertFromOldClassDefinition.R
R/closure.R
R/onLoad.R
R/generatePvals.R
R/doRUnitTests.R
R/sampSize.R
R/generateBounds.R
R/graphTest.R
src/mcp.c
src/gMCP.c
man/getJavaInfo.Rd
man/graphTest.Rd
man/generateBounds.Rd
man/matrix2graph.Rd
man/gMCPResult.Rd
man/unitTestsGMCP.Rd
man/generateWeights.Rd
man/simvastatin.Rd
man/gMCP-package.Rd
man/sampSize.Rd
man/hydroquinone.Rd
man/calcPower.Rd
man/graphMCP.Rd
man/entangled.Rd
man/graphGUI.Rd
man/generatePvals.Rd
man/exampleGraphs.Rd
man/generateTest.Rd
man/replaceVariables.Rd
man/corMatWizard.Rd
man/confint.Rd
man/secondStageTest.Rd
man/joinGraphs.Rd
man/gMCP.Rd
man/rqmvnorm.Rd
man/gPADInterim.Rd
man/bdiagNA.Rd
man/graph2latex.Rd
man/graphAnalysis.Rd
man/doInterim.Rd
man/subgraph.Rd
man/gMCPReport.Rd
man/rejectNode.Rd
man/substituteEps.Rd
man/plotSimCI.Rd
man/placeNodes.Rd
man/extractPower.Rd
java/build.xml
java/org/af/gMCP/poi/GraphDocXWriter.java
java/org/af/gMCP/gui/DebugTextConsole.java
java/org/af/gMCP/gui/MenuBarMGraph.java
java/org/af/gMCP/gui/RControl.java
java/org/af/gMCP/gui/AboutDialog.java
java/org/af/gMCP/gui/JSplitPaneBugWorkAround.java
java/org/af/gMCP/gui/CreateGraphGUI.java
java/org/af/gMCP/gui/ErrorDialogChooseLevel.java
java/org/af/gMCP/gui/commons-logging.properties
java/org/af/gMCP/gui/RCallServicesREngineWrapper.java
java/org/af/gMCP/gui/ErrorDialogGMCP.java
java/org/af/gMCP/gui/ReproducableLog.java
java/org/af/gMCP/gui/commons-logging-verbose.properties
java/org/af/gMCP/gui/contrasts/ROptionBox.java
java/org/af/gMCP/gui/contrasts/AnalysisDialogFactory.java
java/org/af/gMCP/gui/contrasts/LevelOrderListener.java
java/org/af/gMCP/gui/contrasts/ContrastTable.java
java/org/af/gMCP/gui/contrasts/LevelSelectBox.java
java/org/af/gMCP/gui/contrasts/StatMethodDialog.java
java/org/af/gMCP/gui/contrasts/ContrastColorRenderer.java
java/org/af/gMCP/gui/contrasts/VarSelectBox.java
java/org/af/gMCP/gui/contrasts/AnalysisDialogListenerFactory.java
java/org/af/gMCP/gui/contrasts/ContrastDialog2.java
java/org/af/gMCP/gui/contrasts/LevelOrderSL.java
java/org/af/gMCP/gui/contrasts/GroupingListener.java
java/org/af/gMCP/gui/contrasts/ContrastTableModel.java
java/org/af/gMCP/gui/contrasts/GroupingBox.java
java/org/af/gMCP/gui/dialogs/TextFileViewer.java
java/org/af/gMCP/gui/dialogs/RearrangeNodesDialog.java
java/org/af/gMCP/gui/dialogs/GroupDialog.java
java/org/af/gMCP/gui/dialogs/RejectedDialog.java
java/org/af/gMCP/gui/dialogs/AdjustedPValueDialog.java
java/org/af/gMCP/gui/dialogs/GraphSendToArchiveDialog.java
java/org/af/gMCP/gui/dialogs/VariableDialog.java
java/org/af/gMCP/gui/dialogs/LoadGraphFromArchiveDialog.java
java/org/af/gMCP/gui/dialogs/NewVersionDialog.java
java/org/af/gMCP/gui/dialogs/ParameterDialog.java
java/org/af/gMCP/gui/dialogs/DialogConfIntEstVar.java
java/org/af/gMCP/gui/dialogs/VariableNameDialog.java
java/org/af/gMCP/gui/dialogs/TellAboutOnlineUpate.java
java/org/af/gMCP/gui/dialogs/PowerParameterPanel.java
java/org/af/gMCP/gui/dialogs/PowersettingsToXML.java
java/org/af/gMCP/gui/dialogs/MatrixCreationDialog.java
java/org/af/gMCP/gui/dialogs/ColorChooseDialog.java
java/org/af/gMCP/gui/dialogs/PowerOptionsPanel.java
java/org/af/gMCP/gui/dialogs/RObjectLoadingDialog.java
java/org/af/gMCP/gui/dialogs/ImagePanel.java
java/org/af/gMCP/gui/dialogs/InfoDialog.java
java/org/af/gMCP/gui/dialogs/AlternativesDialog.java
java/org/af/gMCP/gui/power/Scenario.java
java/org/af/gMCP/gui/power/ScenarioPanel.java
java/org/af/gMCP/gui/power/MarginalPowerPanel.java
java/org/af/gMCP/gui/power/SampleSizeDialog.java
java/org/af/gMCP/gui/power/PowerDialog.java
java/org/af/gMCP/gui/power/PDialog.java
java/org/af/gMCP/gui/power/GroupPanel.java
java/org/af/gMCP/gui/power/Group.java
java/org/af/gMCP/gui/power/CVPanel.java
java/org/af/gMCP/gui/power/UserDefinedPanel.java
java/org/af/gMCP/gui/power/SettingsToXML.java
java/org/af/gMCP/gui/options/SetPropertiesException.java
java/org/af/gMCP/gui/options/NumericPanel.java
java/org/af/gMCP/gui/options/MiscPanel.java
java/org/af/gMCP/gui/options/SetLookAndFeelException.java
java/org/af/gMCP/gui/options/OptionsPanel.java
java/org/af/gMCP/gui/options/GeneralPanel.java
java/org/af/gMCP/gui/options/OptionsDialog.java
java/org/af/gMCP/gui/graph/NetListPanel.java
java/org/af/gMCP/gui/graph/SubFamily.java
java/org/af/gMCP/gui/graph/UpdateEdge.java
java/org/af/gMCP/gui/graph/NetListSelectionPopUpMenu.java
java/org/af/gMCP/gui/graph/LaTeXTool.java
java/org/af/gMCP/gui/graph/WrongInputException.java
java/org/af/gMCP/gui/graph/GraphView.java
java/org/af/gMCP/gui/graph/EdgeWeight.java
java/org/af/gMCP/gui/graph/UpdateNode.java
java/org/af/gMCP/gui/graph/GraphPanel.java
java/org/af/gMCP/gui/graph/PPanel.java
java/org/af/gMCP/gui/graph/Physics.java
java/org/af/gMCP/gui/graph/NodeListener.java
java/org/af/gMCP/gui/graph/DView.java
java/org/af/gMCP/gui/graph/PrintableObject.java
java/org/af/gMCP/gui/graph/PView.java
java/org/af/gMCP/gui/graph/GraphMCP.java
java/org/af/gMCP/gui/graph/Edge.java
java/org/af/gMCP/gui/graph/NetList.java
java/org/af/gMCP/gui/graph/Node.java
java/org/af/gMCP/gui/graph/NetListPopUpMenu.java
java/org/af/gMCP/gui/graph/annotations/AnnotationPanel.java
java/org/af/gMCP/gui/graph/annotations/Annotation.java
java/org/af/gMCP/gui/graph/annotations/Line.java
java/org/af/gMCP/gui/graph/annotations/Legend.java
java/org/af/gMCP/gui/graph/annotations/Text.java
java/org/af/gMCP/gui/graph/annotations/Note.java
java/org/af/gMCP/gui/graph/annotations/package-info.java
java/org/af/gMCP/gui/graph/annotations/Rectangle.java
java/org/af/gMCP/gui/graph/annotations/Ellipse.java
java/org/af/gMCP/gui/graph/images/update24.png
java/org/af/gMCP/gui/graph/images/Reset.png
java/org/af/gMCP/gui/graph/images/update.png
java/org/af/gMCP/gui/graph/images/latex.png
java/org/af/gMCP/gui/graph/images/zoom_out.png
java/org/af/gMCP/gui/graph/images/rjavaicon64.png
java/org/af/gMCP/gui/graph/images/adjPval.png
java/org/af/gMCP/gui/graph/images/StartTesting.png
java/org/af/gMCP/gui/graph/images/zoom_in.png
java/org/af/gMCP/gui/graph/images/confint2.png
java/org/af/gMCP/gui/graph/images/matrix.png
java/org/af/gMCP/gui/graph/images/edge.png
java/org/af/gMCP/gui/graph/images/vertex.png
java/org/af/gMCP/gui/graph/images/back.png
java/org/af/gMCP/gui/pdf/PDFGenerator.java
java/org/af/gMCP/gui/pdf/PDFViewerStarter.java
java/org/af/gMCP/gui/pdf/Step.java
java/org/af/gMCP/gui/pdf/Result.java
java/org/af/gMCP/gui/pdf/Plot.java
java/org/af/gMCP/gui/datatable/DataTable.java
java/org/af/gMCP/gui/datatable/CellEditorE.java
java/org/af/gMCP/gui/datatable/EpsilonTableCellRenderer.java
java/org/af/gMCP/gui/datatable/DataTableModel.java
java/org/af/gMCP/gui/datatable/RDataFrameRef.java
java/org/af/gMCP/gui/datatable/RowModel.java
java/org/af/gMCP/gui/datatable/SingleDataFramePanel.java
java/org/af/gMCP/gui/datatable/DataFramePanel.java
java/org/af/gMCP/tests/CircleTest.java
java/org/af/gMCP/tests/TeXFormulaTest.java
java/org/af/gMCP/tests/CircleTest3Points.java
java/org/af/gMCP/tests/TestImportExport.java
java/org/af/gMCP/tests/FormatTest.java
java/org/af/gMCP/tests/ThreadExceptionTest.java
java/org/af/gMCP/config/SpecificConfig.java
java/org/af/gMCP/config/VersionComparator.java
java/org/af/gMCP/config/GeneralConfig.java
java/org/af/gMCP/config/Configuration.java
java/org/af/gMCP/config/JavaConfig.java
java/org/af/gMCP/config/PlotConfig.java
java/org/mutoss/gui/JavaGDPanel.java
java/org/mutoss/gui/TransferableImage.java
java/org/mutoss/gui/JavaGD.java
java/org/apache/poi/xwpf/usermodel/XWPFRun.java
java/tests/DataTableTest.java
java/tests/PPanelTest.java
java/tests/NetListTest.java
java/tests/LoadSaveTest.java
java/tests/TexFormulaTest.java
java/tests/RJavaUTF.java
java/tests/RControlTest.java
java/tests/ToolTest.java
java/tests/NodeTest.java
java/tests/OptionPaneTest.java
java/tests/InteractionTest.java
java/tests/EdgeTest.java
java/tests/PowerTest.java
java/tests/TestSuite.java
build/vignette.rds
tests/doRUnit.R
data/simvastatin.rda
data/hydroquinone.rda
