intervals: Tools for working with points and intervals

Tools for working with and comparing sets of points and intervals.

Author
Richard Bourgon <bourgon.richard@gene.com>
Date of publication
2013-03-09 04:37:26
Maintainer
Richard Bourgon <bourgon.richard@gene.com>
License
Artistic-2.0
Version
0.14.0

View on R-Forge

Man pages

as.matrix.Intervals
Extract matrix of endpoints
c.Intervals
Combine different interval matrix objects
close_intervals-methods
Re-represent integer intervals with open or closed endpoints
clusters-methods
Identify clusters in a collection of positions or intervals
distance_to_nearest-methods
Compute distance to nearest position in a set of intervals
empty-methods
Identify empty interval rows
expand-methods
Expand or contract intervals
interval_complement-methods
Compute the complement of a set of intervals
interval_difference-methods
Compute set difference
interval_included-methods
Assess inclusion of one set of intervals with respect to...
interval_intersection-methods
Compute the intersection of one or more sets of intervals
interval_overlap-methods
Assess overlap from one set of intervals to another
Intervals-class
Classes "Intervals" and "Intervals_full"
intervals-package
Tools for working with points and intervals
Intervals_virtual-class
Class "Intervals_virtual"
Intervals_virtual_or_numeric-class
Class "Intervals_virtual_or_numeric"
interval_union-methods
Compute the union of intervals in one or more interval...
plot.Intervals
Plotting methods for interval objects
reduce-methods
Compactly re-represent the points in a set of intervals
sgd
Yeast gene model sample data
size-methods
Compute interval sizes
split.Intervals_virtual
Split an intervals object according to a factor
which_nearest-methods
Identify nearest member(s) in a set of intervals

Files in this package

intervals
intervals/man
intervals/man/interval_complement-methods.Rd
intervals/man/Intervals-class.Rd
intervals/man/c.Intervals.Rd
intervals/man/reduce-methods.Rd
intervals/man/distance_to_nearest-methods.Rd
intervals/man/expand-methods.Rd
intervals/man/empty-methods.Rd
intervals/man/interval_union-methods.Rd
intervals/man/as.matrix.Intervals.Rd
intervals/man/intervals-package.Rd
intervals/man/clusters-methods.Rd
intervals/man/Intervals_virtual-class.Rd
intervals/man/interval_difference-methods.Rd
intervals/man/size-methods.Rd
intervals/man/plot.Intervals.Rd
intervals/man/Intervals_virtual_or_numeric-class.Rd
intervals/man/interval_overlap-methods.Rd
intervals/man/interval_included-methods.Rd
intervals/man/sgd.Rd
intervals/man/interval_intersection-methods.Rd
intervals/man/close_intervals-methods.Rd
intervals/man/which_nearest-methods.Rd
intervals/man/split.Intervals_virtual.Rd
intervals/DESCRIPTION
intervals/src
intervals/src/which_nearest.cpp
intervals/src/reduce.cpp
intervals/src/Endpoint.cpp
intervals/src/Endpoint.h
intervals/src/plot_overlap.cpp
intervals/tests
intervals/tests/intervals_test_code.R
intervals/data
intervals/data/sgd.rdata
intervals/NAMESPACE
intervals/inst
intervals/inst/doc
intervals/inst/doc/intervals_overview.pdf
intervals/inst/doc/intervals_overview.Rnw
intervals/R
intervals/R/size-methods.R
intervals/R/close_intervals-methods.R
intervals/R/clusters.R
intervals/R/interval_difference-methods.R
intervals/R/which_nearest-methods.R
intervals/R/empty-methods.R
intervals/R/t-methods.R
intervals/R/as.matrix.R
intervals/R/show-methods.R
intervals/R/interval_union-methods.R
intervals/R/reduce-methods.R
intervals/R/interval_complement-methods.R
intervals/R/interval_intersection-methods.R
intervals/R/closed-methods.R
intervals/R/head-methods.R
intervals/R/is.na-methods.R
intervals/R/interval_overlap-methods.R
intervals/R/Intervals-class.R
intervals/R/plot.Intervals_virtual.R
intervals/R/distance_to_nearest-methods.R
intervals/R/expand-methods.R
intervals/R/interval_included-methods.R
intervals/R/type-methods.R
intervals/R/c.R
intervals/R/split.R
intervals/NEWS