kinfit: Routines for Fitting Kinetic Models to Chemical Degradation Data

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The FOCUS Kinetics Report first published in 2006 describes mathematical models and recommends statistical methods for the evaluation of chemical degradation data. This package implements fitting the kinetic models suitable for observations of the decline of a single chemical compound (no metabolite formation/decline or multi-compartment kinetics). Please note that no warranty is implied for correctness of results or fitness for a particular purpose. 'kinfit' is maintained, but not actively developed at the moment. Please check the 'mkin' package for an actively developed package for kinetic evaluations of degradation data.

Author
Johannes Ranke [aut, cre, cph], Katrin Lindenberger [ctb]
Date of publication
2015-07-03 13:05:18
Maintainer
Johannes Ranke <jranke@uni-bremen.de>
License
GPL
Version
1.1.14
URLs

View on R-Forge

Man pages

DFOP
Double First-Order in Parallel kinetics
FOCUS_2006_A
Dataset A from the FOCUS Kinetics report from 2006
FOCUS_2006_B
Dataset B from the FOCUS Kinetics report from 2006
FOCUS_2006_C
Dataset C from the FOCUS Kinetics report from 2006
FOCUS_2006_D
Dataset D from the FOCUS Kinetics report from 2006
FOCUS_2006_DFOP_ref_A_to_B
Results of fitting the DFOP model to Datasets A to B of FOCUS...
FOCUS_2006_E
Dataset E from the FOCUS Kinetics report from 2006
FOCUS_2006_F
Water sediment study dataset F from the FOCUS Kinetics report...
FOCUS_2006_FOMC_ref_A_to_F
Results of fitting the FOMC model to Datasets A to F of FOCUS...
FOCUS_2006_HS_ref_A_to_F
Results of fitting the HS model to Datasets A to F of FOCUS...
FOCUS_2006_SFO_ref_A_to_F
Results of fitting the SFO model to Datasets A to F of FOCUS...
FOMC
First-Order Multi-Compartment kinetics
HS
Hockey-Stick kinetics
kinerrmin
Calculate the minimum error to assume in order to pass the...
kinfit
Fit kinetic models to chemical degradation data
kinobject
Creates list representing a kinetic experiment or trial
kinobjects
Creates list of objects, each representing a kinetic...
kinplot
Creates a plot of the kinetic fits
kinreport
Creates a report of the kinetic fits
kinresplot
Creates a plot of the residual for specified kinetic fits
kinresults
Function to collect useful results for a set of fitted...
kinwrite.KinGUI
Function to write KinGUI input files from kinetic data
SFO
Single First-Order kinetics

Files in this package

kinfit/DESCRIPTION
kinfit/NAMESPACE
kinfit/R
kinfit/R/DFOP.R
kinfit/R/FOMC.R
kinfit/R/HS.R
kinfit/R/SFO.R
kinfit/R/kinerrmin.R
kinfit/R/kinfit.R
kinfit/R/kinobject.R
kinfit/R/kinobjects.R
kinfit/R/kinplot.R
kinfit/R/kinreport.R
kinfit/R/kinresplot.R
kinfit/R/kinresults.R
kinfit/R/kinwrite.KinGUI.R
kinfit/build
kinfit/build/vignette.rds
kinfit/data
kinfit/data/FOCUS_2006_A.rda
kinfit/data/FOCUS_2006_B.rda
kinfit/data/FOCUS_2006_C.rda
kinfit/data/FOCUS_2006_D.rda
kinfit/data/FOCUS_2006_DFOP_ref_A_to_B.rda
kinfit/data/FOCUS_2006_E.rda
kinfit/data/FOCUS_2006_F.rda
kinfit/data/FOCUS_2006_FOMC_ref_A_to_F.rda
kinfit/data/FOCUS_2006_HS_ref_A_to_F.rda
kinfit/data/FOCUS_2006_SFO_ref_A_to_F.rda
kinfit/inst
kinfit/inst/doc
kinfit/inst/doc/examples.R
kinfit/inst/doc/examples.Rnw
kinfit/inst/doc/examples.pdf
kinfit/inst/doc/kinfit.R
kinfit/inst/doc/kinfit.Rnw
kinfit/inst/doc/kinfit.pdf
kinfit/man
kinfit/man/DFOP.Rd
kinfit/man/FOCUS_2006_A.Rd
kinfit/man/FOCUS_2006_B.Rd
kinfit/man/FOCUS_2006_C.Rd
kinfit/man/FOCUS_2006_D.Rd
kinfit/man/FOCUS_2006_DFOP_ref_A_to_B.Rd
kinfit/man/FOCUS_2006_E.Rd
kinfit/man/FOCUS_2006_F.Rd
kinfit/man/FOCUS_2006_FOMC_ref_A_to_F.Rd
kinfit/man/FOCUS_2006_HS_ref_A_to_F.Rd
kinfit/man/FOCUS_2006_SFO_ref_A_to_F.Rd
kinfit/man/FOMC.Rd
kinfit/man/HS.Rd
kinfit/man/SFO.Rd
kinfit/man/kinerrmin.Rd
kinfit/man/kinfit.Rd
kinfit/man/kinobject.Rd
kinfit/man/kinobjects.Rd
kinfit/man/kinplot.Rd
kinfit/man/kinreport.Rd
kinfit/man/kinresplot.Rd
kinfit/man/kinresults.Rd
kinfit/man/kinwrite.KinGUI.Rd
kinfit/tests
kinfit/tests/test_FOCUS_2006_A.R
kinfit/tests/test_FOCUS_2006_A.Rout.save
kinfit/vignettes
kinfit/vignettes/KinGUI
kinfit/vignettes/KinGUI/A_DFOP_report.txt
kinfit/vignettes/KinGUI/A_DFOP_report_detailed.txt
kinfit/vignettes/KinGUI/A_FOMC_report.txt
kinfit/vignettes/KinGUI/A_FOMC_report_detailed.txt
kinfit/vignettes/KinGUI/A_HS_report.txt
kinfit/vignettes/KinGUI/A_HS_report_detailed.txt
kinfit/vignettes/KinGUI/A_KinGUI.txt
kinfit/vignettes/KinGUI/A_SFO_report.txt
kinfit/vignettes/KinGUI/A_SFO_report_detailed.txt
kinfit/vignettes/KinGUI/B_DFOP_report.txt
kinfit/vignettes/KinGUI/B_DFOP_report_detailed.txt
kinfit/vignettes/KinGUI/B_FOMC_report.txt
kinfit/vignettes/KinGUI/B_FOMC_report_detailed.txt
kinfit/vignettes/KinGUI/B_HS_report.txt
kinfit/vignettes/KinGUI/B_HS_report_detailed.txt
kinfit/vignettes/KinGUI/B_KinGUI.txt
kinfit/vignettes/KinGUI/B_SFO_report.txt
kinfit/vignettes/KinGUI/B_SFO_report_detailed.txt
kinfit/vignettes/KinGUI/C_DFOP_report.txt
kinfit/vignettes/KinGUI/C_DFOP_report_detailed.txt
kinfit/vignettes/KinGUI/C_FOMC_report.txt
kinfit/vignettes/KinGUI/C_FOMC_report_detailed.txt
kinfit/vignettes/KinGUI/C_HS_report.txt
kinfit/vignettes/KinGUI/C_HS_report_detailed.txt
kinfit/vignettes/KinGUI/C_KinGUI.txt
kinfit/vignettes/KinGUI/C_SFO_report.txt
kinfit/vignettes/KinGUI/C_SFO_report_detailed.txt
kinfit/vignettes/KinGUI/D_DFOP_report.txt
kinfit/vignettes/KinGUI/D_DFOP_report_detailed.txt
kinfit/vignettes/KinGUI/D_FOMC_report.txt
kinfit/vignettes/KinGUI/D_FOMC_report_detailed.txt
kinfit/vignettes/KinGUI/D_HS_report.txt
kinfit/vignettes/KinGUI/D_HS_report_detailed.txt
kinfit/vignettes/KinGUI/D_KinGUI.txt
kinfit/vignettes/KinGUI/D_SFO_report.txt
kinfit/vignettes/KinGUI/D_SFO_report_detailed.txt
kinfit/vignettes/KinGUI/F_system_DFOP_report.txt
kinfit/vignettes/KinGUI/F_system_FOMC_report.txt
kinfit/vignettes/KinGUI/F_system_HS_report.txt
kinfit/vignettes/KinGUI/F_system_KinGUI.txt
kinfit/vignettes/KinGUI/F_system_SFO_report.txt
kinfit/vignettes/KinGUI/F_water_DFOP_report.txt
kinfit/vignettes/KinGUI/F_water_FOMC_report.txt
kinfit/vignettes/KinGUI/F_water_HS_report.txt
kinfit/vignettes/KinGUI/F_water_KinGUI.txt
kinfit/vignettes/KinGUI/F_water_SFO_report.txt
kinfit/vignettes/examples.Rnw
kinfit/vignettes/header.tex
kinfit/vignettes/kinfit.Rnw
kinfit/vignettes/references.bib