kinfit: Routines for Fitting Kinetic Models to Chemical Degradation Data
Version 1.1.14

The FOCUS Kinetics Report first published in 2006 describes mathematical models and recommends statistical methods for the evaluation of chemical degradation data. This package implements fitting the kinetic models suitable for observations of the decline of a single chemical compound (no metabolite formation/decline or multi-compartment kinetics). Please note that no warranty is implied for correctness of results or fitness for a particular purpose. 'kinfit' is maintained, but not actively developed at the moment. Please check the 'mkin' package for an actively developed package for kinetic evaluations of degradation data.

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AuthorJohannes Ranke [aut, cre, cph], Katrin Lindenberger [ctb]
Date of publication2015-07-03 13:05:18
MaintainerJohannes Ranke <jranke@uni-bremen.de>
LicenseGPL
Version1.1.14
URL http://cran.r-project.org http://kinfit.r-forge.r-project.org
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("kinfit", repos="http://R-Forge.R-project.org")

Man pages

DFOP: Double First-Order in Parallel kinetics
FOCUS_2006_A: Dataset A from the FOCUS Kinetics report from 2006
FOCUS_2006_B: Dataset B from the FOCUS Kinetics report from 2006
FOCUS_2006_C: Dataset C from the FOCUS Kinetics report from 2006
FOCUS_2006_D: Dataset D from the FOCUS Kinetics report from 2006
FOCUS_2006_DFOP_ref_A_to_B: Results of fitting the DFOP model to Datasets A to B of FOCUS...
FOCUS_2006_E: Dataset E from the FOCUS Kinetics report from 2006
FOCUS_2006_F: Water sediment study dataset F from the FOCUS Kinetics report...
FOCUS_2006_FOMC_ref_A_to_F: Results of fitting the FOMC model to Datasets A to F of FOCUS...
FOCUS_2006_HS_ref_A_to_F: Results of fitting the HS model to Datasets A to F of FOCUS...
FOCUS_2006_SFO_ref_A_to_F: Results of fitting the SFO model to Datasets A to F of FOCUS...
FOMC: First-Order Multi-Compartment kinetics
HS: Hockey-Stick kinetics
kinerrmin: Calculate the minimum error to assume in order to pass the...
kinfit: Fit kinetic models to chemical degradation data
kinobject: Creates list representing a kinetic experiment or trial
kinobjects: Creates list of objects, each representing a kinetic...
kinplot: Creates a plot of the kinetic fits
kinreport: Creates a report of the kinetic fits
kinresplot: Creates a plot of the residual for specified kinetic fits
kinresults: Function to collect useful results for a set of fitted...
kinwrite.KinGUI: Function to write KinGUI input files from kinetic data
SFO: Single First-Order kinetics

Functions

DFOP Man page Source code
FOCUS_2006_A Man page
FOCUS_2006_B Man page
FOCUS_2006_C Man page
FOCUS_2006_D Man page
FOCUS_2006_DFOP_ref_A_to_B Man page
FOCUS_2006_E Man page
FOCUS_2006_F Man page
FOCUS_2006_FOMC_ref_A_to_F Man page
FOCUS_2006_HS_ref_A_to_F Man page
FOCUS_2006_SFO_ref_A_to_F Man page
FOMC Man page Source code
HS Man page Source code
SFO Man page Source code
kinerrmin Man page Source code
kinfit Man page Source code
kinobject Man page Source code
kinobjects Man page Source code
kinplot Man page Source code
kinreport Man page Source code
kinresplot Man page Source code
kinresults Man page Source code
kinwrite.KinGUI Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/DFOP.R
R/FOMC.R
R/HS.R
R/SFO.R
R/kinerrmin.R
R/kinfit.R
R/kinobject.R
R/kinobjects.R
R/kinplot.R
R/kinreport.R
R/kinresplot.R
R/kinresults.R
R/kinwrite.KinGUI.R
build
build/vignette.rds
data
data/FOCUS_2006_A.rda
data/FOCUS_2006_B.rda
data/FOCUS_2006_C.rda
data/FOCUS_2006_D.rda
data/FOCUS_2006_DFOP_ref_A_to_B.rda
data/FOCUS_2006_E.rda
data/FOCUS_2006_F.rda
data/FOCUS_2006_FOMC_ref_A_to_F.rda
data/FOCUS_2006_HS_ref_A_to_F.rda
data/FOCUS_2006_SFO_ref_A_to_F.rda
inst
inst/doc
inst/doc/examples.R
inst/doc/examples.Rnw
inst/doc/examples.pdf
inst/doc/kinfit.R
inst/doc/kinfit.Rnw
inst/doc/kinfit.pdf
man
man/DFOP.Rd
man/FOCUS_2006_A.Rd
man/FOCUS_2006_B.Rd
man/FOCUS_2006_C.Rd
man/FOCUS_2006_D.Rd
man/FOCUS_2006_DFOP_ref_A_to_B.Rd
man/FOCUS_2006_E.Rd
man/FOCUS_2006_F.Rd
man/FOCUS_2006_FOMC_ref_A_to_F.Rd
man/FOCUS_2006_HS_ref_A_to_F.Rd
man/FOCUS_2006_SFO_ref_A_to_F.Rd
man/FOMC.Rd
man/HS.Rd
man/SFO.Rd
man/kinerrmin.Rd
man/kinfit.Rd
man/kinobject.Rd
man/kinobjects.Rd
man/kinplot.Rd
man/kinreport.Rd
man/kinresplot.Rd
man/kinresults.Rd
man/kinwrite.KinGUI.Rd
tests
tests/test_FOCUS_2006_A.R
tests/test_FOCUS_2006_A.Rout.save
vignettes
vignettes/KinGUI
vignettes/KinGUI/A_DFOP_report.txt
vignettes/KinGUI/A_DFOP_report_detailed.txt
vignettes/KinGUI/A_FOMC_report.txt
vignettes/KinGUI/A_FOMC_report_detailed.txt
vignettes/KinGUI/A_HS_report.txt
vignettes/KinGUI/A_HS_report_detailed.txt
vignettes/KinGUI/A_KinGUI.txt
vignettes/KinGUI/A_SFO_report.txt
vignettes/KinGUI/A_SFO_report_detailed.txt
vignettes/KinGUI/B_DFOP_report.txt
vignettes/KinGUI/B_DFOP_report_detailed.txt
vignettes/KinGUI/B_FOMC_report.txt
vignettes/KinGUI/B_FOMC_report_detailed.txt
vignettes/KinGUI/B_HS_report.txt
vignettes/KinGUI/B_HS_report_detailed.txt
vignettes/KinGUI/B_KinGUI.txt
vignettes/KinGUI/B_SFO_report.txt
vignettes/KinGUI/B_SFO_report_detailed.txt
vignettes/KinGUI/C_DFOP_report.txt
vignettes/KinGUI/C_DFOP_report_detailed.txt
vignettes/KinGUI/C_FOMC_report.txt
vignettes/KinGUI/C_FOMC_report_detailed.txt
vignettes/KinGUI/C_HS_report.txt
vignettes/KinGUI/C_HS_report_detailed.txt
vignettes/KinGUI/C_KinGUI.txt
vignettes/KinGUI/C_SFO_report.txt
vignettes/KinGUI/C_SFO_report_detailed.txt
vignettes/KinGUI/D_DFOP_report.txt
vignettes/KinGUI/D_DFOP_report_detailed.txt
vignettes/KinGUI/D_FOMC_report.txt
vignettes/KinGUI/D_FOMC_report_detailed.txt
vignettes/KinGUI/D_HS_report.txt
vignettes/KinGUI/D_HS_report_detailed.txt
vignettes/KinGUI/D_KinGUI.txt
vignettes/KinGUI/D_SFO_report.txt
vignettes/KinGUI/D_SFO_report_detailed.txt
vignettes/KinGUI/F_system_DFOP_report.txt
vignettes/KinGUI/F_system_FOMC_report.txt
vignettes/KinGUI/F_system_HS_report.txt
vignettes/KinGUI/F_system_KinGUI.txt
vignettes/KinGUI/F_system_SFO_report.txt
vignettes/KinGUI/F_water_DFOP_report.txt
vignettes/KinGUI/F_water_FOMC_report.txt
vignettes/KinGUI/F_water_HS_report.txt
vignettes/KinGUI/F_water_KinGUI.txt
vignettes/KinGUI/F_water_SFO_report.txt
vignettes/examples.Rnw
vignettes/header.tex
vignettes/kinfit.Rnw
vignettes/references.bib
kinfit documentation built on May 21, 2017, 3:55 a.m.