localEM: Nonparametric Modelling of Spatial Risk for Areal Disease Data
Version 0.2.0

Implementing the kernel smoothing local-EM algorithm on disease data aggregated to highly coarse geographical regions while using population data collected on highly fine geographical regions to estimate spatial risk.

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AuthorPaul Nguyen, Patrick Brown
Date of publication2016-12-13 20:10:03
MaintainerPaul Nguyen <pablo.nguyen@utoronto.ca>
LicenseGPL-2
Version0.2.0
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("localEM", repos="http://R-Forge.R-project.org")

Man pages

excProb: Computes the exceedance probabilities on the raster of fine...
kentuckyCounty: Observed cancer case data in Kentucky
kentuckyTract: Population and expected cancer case data in Kentucky
kMap: Map of Kentucky
lemXv: Computes the likelihood cross-validation
rasterPartition: Generates the partitions by overlaying rasters of the coarse...
riskEst: Computes the relative risk estimation on the raster of fine...
smoothingMatrix: Generates the smoothing matrix for the partitions and...

Functions

excProb Man page Source code
focalFromBw Source code
focalWeightWithSize Source code
getCellInfo Source code
kMap Man page
kentuckyCounty Man page
kentuckyTract Man page
kernMat Source code
lemXv Man page Source code
oneLastStepSmooth Source code
oneLemIter Source code
rasterPartition Man page Source code
reorderCellsTranslate Source code
riskEst Man page Source code
smoothingMatrix Man page Source code
smoothingMatrixDiag Source code
smoothingMatrixEntries Source code
smoothingMatrixOneDist Source code
xvLemEst Source code
xvLemEstOneBw Source code

Files

DESCRIPTION
NAMESPACE
R
R/excProbFun.R
R/kentuckyData.R
R/kernMatUtils.R
R/lemEstFun.R
R/lemXvEstUtils.R
R/lemXvFun.R
R/rasterPartFun.R
R/smoothMatFun.R
R/smoothMatUtils.R
build
build/vignette.rds
data
data/datalist
data/kMap.RData
data/kentuckyCounty.RData
data/kentuckyTract.RData
inst
inst/dataSource
inst/dataSource/usaPopulation.R
inst/doc
inst/doc/kentucky.Rmd
inst/doc/kentucky.html
localEM.Rproj
man
man/excProb.Rd
man/kMap.Rd
man/kentuckyCounty.Rd
man/kentuckyTract.Rd
man/lemXv.Rd
man/rasterPartition.Rd
man/riskEst.Rd
man/smoothingMatrix.Rd
vignettes
vignettes/kentucky.Rmd
vignettes/toCleanMakefile
localEM documentation built on May 21, 2017, 12:36 a.m.